Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2620 ATGTCTCAGTCATTGCTCATCACAGACTCAGAATCTTCACTTCTGCTCTGTTCGTTGCTGTTAGATCCGCTTCTTCTCCAATCTAATCGAATACCTTATACCCACATCCTGCAATCACTTGTTGTCATCTGGGTTTCTCTCAGATCTCCGAAATCTCTCTCGGAAATGGTGGATCCGAGTGGGAAGGGATCAGAAGCCGAAGACGGGGCCTCGTCGGAAGAGAGCCCAACAATGAGCGAGCAGAAGAAGACCTGTGCCGATTGCGGCACCAGCAAGACCCCTCTCTGGAGGGGTGGTCCGGCTGGGCCGAAGTCACTGTGCAACGCCTGTGGGATCAGAAGCAGGAAGAAGAAAAGAGCGATTCTGGGTTTGAACAAGGGAAGCAATGAAGATAAAAAGGGAAAGAGAAACAGTAATAACAATGGAAGCAGTAAGATCGGGGATAGTTTGAAGCAGAGATTGTTGGCTTTGGGAAGGGAGGTTTTGATGCAGAGATCAACGGTGGAGGGGCAGAGGAAGAAGTTGAGAGAGGATGAACAAGCAGCAGTTCTATTGATGGCTCTCTCTTATGGCTCCGTTTATGCTTAG 588 0.4915 MSQSLLITDSESSLLLCSLLLDPLLLQSNRIPYTHILQSLVVIWVSLRSPKSLSEMVDPSGKGSEAEDGASSEESPTMSEQKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGLNKGSNEDKKGKRNSNNNGSSKIGDSLKQRLLALGREVLMQRSTVEGQRKKLREDEQAAVLLMALSYGSVYA 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2620 195 PANTHER OS01G0976800 PROTEIN 65 195 - -
Dere03g2620 195 MobiDBLite consensus disorder prediction 121 149 - -
Dere03g2620 195 MobiDBLite consensus disorder prediction 70 88 - -
Dere03g2620 195 CDD ZnF_GATA 84 137 IPR000679 GO:0006355|GO:0043565
Dere03g2620 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 81 119 - -
Dere03g2620 195 Gene3D - 80 145 IPR013088 GO:0006355|GO:0008270
Dere03g2620 195 ProSiteProfiles GATA-type zinc finger domain profile. 79 115 IPR000679 GO:0006355|GO:0043565
Dere03g2620 195 SMART GATA_3 79 129 IPR000679 GO:0006355|GO:0043565
Dere03g2620 195 ProSitePatterns GATA-type zinc finger domain. 85 110 IPR000679 GO:0006355|GO:0043565
Dere03g2620 195 MobiDBLite consensus disorder prediction 123 138 - -
Dere03g2620 195 MobiDBLite consensus disorder prediction 53 97 - -
Dere03g2620 195 Pfam GATA zinc finger 85 119 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2620 Dere-ChrDere03 41042304 41044333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2620 67 195 C2C2-Gata Transcription Factor Family AT3G06740 64.885 2.57e-49 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere03g2620 GATA 2.3e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g2620 03 41042304 41044333 Dere03g2620 03 41042304 41044333 ECH