Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2617 ATGTTCCGTTATGGGCTTCTAGATGAAAGTCAGAACAAGCTCGATTATTCCTTGGCTTTGACTGTAGAGAACTTCCTTGAGCATCACTTACAAACTCTTGTCTTCAAATCAGGAATGGCAAAGTCAATTCACCATGCTAGGGTACTTATAAGGCAGAGGCACATCAGGGTTAGGAGGCAGGTGGTGAACATCCCATCTTTCATGAGAGATGGCGTCAGGGACGAGGCTACCAACAAAGAGAGACCGAGGGGCGAGAAACTAAAACTGAAGAAGATGAGGAAGAAGAAGAGAGGGGAGGAGGGCAATAAGGAGGAACCGAAACCAAAAAGAGAAAAGGAAGAGGGGACAACAGAAAATAGTCTCTACGTTCATGTATGA 378 0.4524 MFRYGLLDESQNKLDYSLALTVENFLEHHLQTLVFKSGMAKSIHHARVLIRQRHIRVRRQVVNIPSFMRDGVRDEATNKERPRGEKLKLKKMRKKKRGEEGNKEEPKPKREKEEGTTENSLYVHV 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2617 125 NCBIfam 30S ribosomal protein S4 2 69 IPR005710 GO:0003735|GO:0006412|GO:0015935
Dere03g2617 125 Pfam S4 domain 30 68 IPR002942 GO:0003723
Dere03g2617 125 SUPERFAMILY Alpha-L RNA-binding motif 12 100 - -
Dere03g2617 125 PANTHER 30S 40S RIBOSOMAL PROTEIN 1 110 IPR022801 GO:0003735|GO:0015935|GO:0019843
Dere03g2617 125 MobiDBLite consensus disorder prediction 68 125 - -
Dere03g2617 125 CDD S4 30 68 - -
Dere03g2617 125 Gene3D - 27 118 IPR036986 GO:0003723
Dere03g2617 125 MobiDBLite consensus disorder prediction 97 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2617 Dere-ChrDere03 40883542 40884249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2617 1 68 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 88.235 7.08e-38 125