Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2611 ATGTCGCTCAGGCCGAATGCTAGAACCGAGGTTCGCCGCAACCGTTACAAGGTGGCGGTGGACGCCGATGAGGGCCGCCGAAGAAGAGAAGACAACATGGTCGAGATCCGTAAGAGCAAGCGCGAAGAGAGCTTGCAGAAGAAGCGTCGCGAAGGTCTACAAGCCCAGCAGCAATTCGCCACTCCTATTCAAACTTCTACTGTTGAGAAAAAGTTGGAGAGTCTTCCTTCAATGGTTGCTGGGGTTTGGTCGGATGACAGCAGTCTGCAGCTAGAAGCCACTACACAATTTCGGAAGCTGCTTTCTATTGAGCGGAGCCCTCCAATTGAGGAAGTTATTCAATCTGGTGTTGTGCCGCGTTTTGTTGAGTTTCTTGTTAGGGAGGATTTCCCTCAACTTCAGTTTGAGGCCGCATGGGCTCTTACAAACATTGCATCTGGAACTTCGGAGAACACCAAGGTGGTAATTGATCATGGGGCAGTCCCAATATTTGTTAAGCTACTTAGTTCTCCAAGTGATGATGTTCGGGAGCAGGCTGTGTGGGCTCTGGGAAATGTTGCTGGTGACTCCCCTAGGTGCCGTGATCTTGTTCTCAGCCATGGTGCCCTGATCCCACTATTGGCGCAGTTGAATGAGCATGCAAAACTTTCAATGTTGAGGAATGCCACATGGACCCTATCCAATTTTTGCAGGGGCAAGCCACAGCCCCCATTTGAGCAGGTGAGGCCTGCACTTCCAGCTCTAGAGCGTTTGGTTTTTTCCAATGATGAAGAAGTCCTGACAGATGCGTGCTGGGCACTGTCATATCTTTCTGATGGAACAAATGACAAAATCCAAGCAGTTATTGAGGCAGGTGTATGTGGCCGATTAGTGCAGCTCCTTCTGCATCCATCTCCTTCTGTTCTCATTCCTGCCCTTCGCACAGTGGGAAATATAGTGACTGGAGATGATCTTCAGACTCAGTGTATCATCAATCACGGTGCACTGCCGTGTCTTTTGAGCCTGTTGACGCATAATCACAAGAAAAGCATTAAGAAAGAAGCATGCTGGACTATATCAAACATTACTGCTGGAAACAGAGAACAGATACAGGCTGTTATTGAAGCTGGTCTGATTGCTCCCCTTGTCAATCTCCTTCAAAATGCGGAGTTTGATATTAAGAAAGAAGCTGCATGGGCAATCTCAAATGCTACATCGGGTGGCACTCATGAGCAGATAAAGTACTTGGTGAGTCAAGGTTGCATAAAGCCTCTTTGTGATCTGCTTGTTTGCCCGGACCCAAGAATTGTCACTGTCTGTTTAGAAGGCCTAGAGAATATTCTGAAGGTTGGGGAAGCTGAGAAGAGCTTAGAGTCATGA 1359 0.4798 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFATPIQTSTVEKKLESLPSMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVQLLLHPSPSVLIPALRTVGNIVTGDDLQTQCIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNREQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLES 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2611 452 SMART arm_5 148 188 IPR000225 GO:0005515
Dere03g2611 452 SMART arm_5 233 272 IPR000225 GO:0005515
Dere03g2611 452 SMART arm_5 359 399 IPR000225 GO:0005515
Dere03g2611 452 SMART arm_5 316 357 IPR000225 GO:0005515
Dere03g2611 452 SMART arm_5 402 442 IPR000225 GO:0005515
Dere03g2611 452 SMART arm_5 189 231 IPR000225 GO:0005515
Dere03g2611 452 SMART arm_5 105 146 IPR000225 GO:0005515
Dere03g2611 452 SMART arm_5 274 314 IPR000225 GO:0005515
Dere03g2611 452 FunFam Importin subunit alpha 11 50 - -
Dere03g2611 452 Pfam Importin beta binding domain 12 95 IPR002652 GO:0006606|GO:0061608
Dere03g2611 452 Gene3D - 73 452 IPR011989 -
Dere03g2611 452 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 370 IPR000225 GO:0005515
Dere03g2611 452 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 370 398 IPR000225 GO:0005515
Dere03g2611 452 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Dere03g2611 452 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Dere03g2611 452 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Dere03g2611 452 PANTHER IMPORTIN ALPHA 12 448 - -
Dere03g2611 452 PIRSF Importin_alpha 2 452 IPR024931 GO:0005737|GO:0006606|GO:0061608
Dere03g2611 452 Pfam Armadillo/beta-catenin-like repeat 244 271 IPR000225 GO:0005515
Dere03g2611 452 Pfam Armadillo/beta-catenin-like repeat 275 313 IPR000225 GO:0005515
Dere03g2611 452 Pfam Armadillo/beta-catenin-like repeat 317 357 IPR000225 GO:0005515
Dere03g2611 452 Pfam Armadillo/beta-catenin-like repeat 359 398 IPR000225 GO:0005515
Dere03g2611 452 Pfam Armadillo/beta-catenin-like repeat 403 440 IPR000225 GO:0005515
Dere03g2611 452 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Dere03g2611 452 Pfam Armadillo/beta-catenin-like repeat 190 231 IPR000225 GO:0005515
Dere03g2611 452 Pfam Armadillo/beta-catenin-like repeat 106 146 IPR000225 GO:0005515
Dere03g2611 452 MobiDBLite consensus disorder prediction 37 57 - -
Dere03g2611 452 FunFam Importin subunit alpha 73 452 - -
Dere03g2611 452 Gene3D - 11 50 IPR036975 GO:0006606
Dere03g2611 452 SUPERFAMILY ARM repeat 6 448 IPR016024 -
Dere03g2611 452 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 243 285 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2611 Dere-ChrDere03 40624126 40627994 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2611 131 391 U-box Gene Family AT3G46510 25.287 7.66e-11 62.4