Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2605 ATGTCCCCAGTTCAAGATACAATAAGATCGTCCTCATCCTCAAAGAAAGTACCAACGGGAAGAGCACCTTGCTGTGACAAAGTGGGTTTGAAGAAAGGAAGATGGACAGCTGAAGAGGACCAAATCTTGACCAACTACATCCAACAAAACGGTGAAGGCTCTTGGAGGTCCTTGCCAAAAAATGCAGGGTTATTGAGGTGTGGGAAGAGTTGCAGACTGAGATGGATCAACTATTTGAGAGCAGACGTGAAGAGAGGAAACATCACCCCTCAGGAAGAAGCCATCATTGTGAAGCTTCATGCCGTCCTTGGTAATAGGTGGTCTGTGATAGCTGGGCATCTACCTGGAAGAACAGATAATGAGATAAAGAATTATTGGAACTCTCATTTGAGGAGAAAAATCTACTGCTTCATGAGACCCTCAAACTCAGACGACTCCCTCCCTCCTATTGACATGGCTGCAGCTCTAAACGTAGCTGCTTCATCCAGACGAGGAAGAGGTGGCCGAGGCAGACCAACTCAACCACCCATGCAAGAGGATGACAAAAACAATATTCCTCTCAACCAAAACTTGTACACAAATATGAACGCACACAATGCGTTCGATGAAATGTGTCAAGGAAAAGCGACCCAACAAAGATACAATGTGGGGCAAACTGAGGAAGTTTCCATGATGGATTCTGGATCTTGGAGCCTAAATCACCAAGAAGAGGCCGTCGACGGTTTTGGTTTTGATGCATATTGTGAGATGAGTAGTGATGAGACTAATGGTACAGCAGCATTATGCCCCAACATGAACGGAGAATTTGAGGACTTGGGGCCATATCAATGGCTAGATGACGAAATAATGAAACTTAATTACATGTTTGAGAGTGGAATGCTTGTAAACCCAAGTGGGTATACAAATAATTATGAGGAGGAGCTTAGCGGAAATAACAGTATGGGAAGAGAATACTGTGGAGTTGTGAATGGTAATACGGAAATGAAAATGGCAACAAGTGAGGATAGTAAAGGTGGTGTTTGGAGCTCAATATCGAATAAAGCAGAAAATGGGGAGTGGTATAGTAATAATCATACAAGCTGTACATCATCAGTGAATTCTGTTTATGATTATCAATGGGTTGATTGGGATATGGCAGCTAGTGTCCAATCCCATAATCCATGGGACCTGCAGTGCGAAGAAAACCAGATGGCGACTTCCTGGTGGGATACTACTGCAGAAGGTGAAGTAAATAACTTCCACTGA 1245 0.4353 MSPVQDTIRSSSSSKKVPTGRAPCCDKVGLKKGRWTAEEDQILTNYIQQNGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADVKRGNITPQEEAIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMRPSNSDDSLPPIDMAAALNVAASSRRGRGGRGRPTQPPMQEDDKNNIPLNQNLYTNMNAHNAFDEMCQGKATQQRYNVGQTEEVSMMDSGSWSLNHQEEAVDGFGFDAYCEMSSDETNGTAALCPNMNGEFEDLGPYQWLDDEIMKLNYMFESGMLVNPSGYTNNYEEELSGNNSMGREYCGVVNGNTEMKMATSEDSKGGVWSSISNKAENGEWYSNNHTSCTSSVNSVYDYQWVDWDMAASVQSHNPWDLQCEENQMATSWWDTTAEGEVNNFH 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2605 414 Pfam Myb-like DNA-binding domain 85 130 IPR001005 -
Dere03g2605 414 Pfam Myb-like DNA-binding domain 32 79 IPR001005 -
Dere03g2605 414 SMART sant 31 81 IPR001005 -
Dere03g2605 414 SMART sant 84 132 IPR001005 -
Dere03g2605 414 ProSiteProfiles Myb-like domain profile. 80 130 IPR001005 -
Dere03g2605 414 MobiDBLite consensus disorder prediction 1 21 - -
Dere03g2605 414 FunFam Myb transcription factor 29 105 - -
Dere03g2605 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 134 IPR017930 -
Dere03g2605 414 Gene3D - 29 85 - -
Dere03g2605 414 ProSiteProfiles Myb-like domain profile. 27 79 IPR001005 -
Dere03g2605 414 MobiDBLite consensus disorder prediction 161 183 - -
Dere03g2605 414 SUPERFAMILY Homeodomain-like 29 126 IPR009057 -
Dere03g2605 414 CDD SANT 34 79 IPR001005 -
Dere03g2605 414 CDD SANT 89 130 IPR001005 -
Dere03g2605 414 MobiDBLite consensus disorder prediction 1 18 - -
Dere03g2605 414 Gene3D - 89 134 - -
Dere03g2605 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 79 IPR017930 -
Dere03g2605 414 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 20 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2605 Dere-ChrDere03 40565822 40569199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2605 20 169 MYB Transcription Factor Family AT2G47460 69.481 1.91e-72 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere03g2605 Myb_DNA-binding 1.4e-12 CL0123