Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2560 ATGGGAACTCCACCAGCAGAAGAGCTTCTCAAGAAGATCGAGGACCTCGAGGTGGGTCACGCTCATCTCAAGCAAGAAATGTCCAAGCTCAAGCTCTCGGGTGCGACCGATGCTAGAGCCGAGCAGAGCCATCATCGCCAGAGGTCGCACTCGATATCGCCGCAGCGTTCGAGATTTGTTGCGCCCAGGAGGAGAGCCGGTGGTGGGGGATTCGACGGACCAGCTTCGTGGAAGAAAGGGTCGTCTTCGTTTAAACATTCGTCACCGCTTCAGAGGGAAAGCCGTAGCAGTGATCCTCAAAAGGATGTAGAAGGTGGCGTTGGAAGGGGCCCTTCAGCTGTGAATTTTACTGACGGGCAGTATCTGAATATTTTGCAGTCAATGGGACAGTCTGTTCACGTATTGGATCTTAACGGTCGCATAATATACTGGAACCGTAGTGCTGAAAATCTATATGGTTATCCAGCAGAGGAAGCCCTTAATCAGGATGGCATTGAGCTGCTTGTAGAGCCCGGAGATTTTGCCCTAGCCAATGATATAGTCAAGCGGGTCACTATGGGAGAGAAATGGATGGGGCAGTTCCCTGCCAAAAATAAGATGGGAGAGAAGTTTTTGGCTGTAGCAACCAATACTCCTTTCTATGATGATGATGGAAGTTTGGTTGGCATTATTTGTGTCTCAAGTGATTCACAACCCTTTCTTGAATTGAGAGTTCCATTCTCAGGTGTAAAGCAATTTGAAACAGATTCAGGCTCCAGCAATCTTAAAAGTAGCATTACAGCTAAACTGGGTCTCGACTCTCAACAGCCTCTTCAAGTTAATCTAGCATCAAAATTATCAAATTTGGCATCCAAGGTGAGTAACAAAATGAAGTCAAGAATCCGAACAGGAGACAATAATATAGATCGTGAAGGTGGGAGTGCCGAAAGTCATCATTCTGAACATAGCTTCTCAGATTCTGTTCTTTATGACCAGAGAGAAGATGCTGCTTCAAGTGGTGCTAGCACACCCAGAGGAGATGTGCAACCATCTCCCTTTGGTGTATGCTCTCACATGGAAGACAAATACCAAGGAAAACAATTGAGAGATTCTGGTGATGAGGGTGAAGGAAAACCTATACATAAAAGCTTAACCTCTAAAGCTGAAGCATGGATTCAAAAGAAAACAATGTCATGGCCATGGAAAGCAAATGAGCGAGATGGGTCAGAGGCAAGAAATGTCCGTGTTGCTTGGCCTTGGTTGCAGAATGATCAAGAAAATGAGCCAGTTCAGCGGAAAACTCCTTCTGGTGTGAGGCCAGAAAGCCAGACAGTAGAAAGTAATCGACCTGTTAATAATGAAGCATCAGGATCCTGGTCCTCCTCTTTCAATGTTAACAGCACAAGTAGTGCCAGCAGCTGTGGGAGTGCCAGCAGCTGTGCTGTCAATAATAAAGTGGATATGGATTCTGATTGCTTGGATTATGAAATCTTGTGGGAGGACTTGACAATTGGAGAACAAATTGGGCAAGGATCATGTGGAACTGTTTATCATGCTCTGTGGTATGGATCAGATGTTGCTGTGAAGGTGTTCTCCAAACAAGAATACTCAGAGGATGTAATAATGTCCTTCAGACAAGAGGTGTCTGTTATGAAAAGACTTCGACATCCAAATGTTCTTCTTTTCATGGGGGCAGTGACTTCACCTCAACGTCTCTGCATTGTCACAGAGTTTCTCCCACGTGGAAGCTTGTTTCGCTTACTCCAGAGAAATACAGCCAAACTTGACTGGAGAAGGCGAGTTCATATGGCCTTAGATATTGCACGAGGAGTGAACTATCTTCATCATTGCAACCCACCTATCATTCATCGAGATTTGAAGTCTTCAAATCTTCTAGTCGATAAGAACTGGACTGTTAAGGTTGGCGATTTTGGCCTTTCACGTCTAAAGCATGAAACATATCTCACAACCAAGACAGGAAAGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAGCCTTCCGATGAGAAGTCTGATGTATACAGCTTTGGGGTGATATTGTGGGAACTTACAACTGAAAAAATCCCTTGGGAGAGTCTCAACTCAATGCAGGTGATTGGAGCTGTTGGGTTCATGAACCAGCGACTAGAAATTCCAAAGGATGTTGATCCTAAGTGGGCTGCTATAATTGAGAGCTGCTGGCATAGTGATCCGGCTTGCCGGCCAACATTTCAGGAACTGCTGGAAAGGCTTCGAGAGCTGCAGAGACAGTATGCCTTACAGTTTCAAGCAGCTCGATCTGCTGGTGGTGAAAACACCCAAAAGGAGTCCTAG 2322 0.4561 MGTPPAEELLKKIEDLEVGHAHLKQEMSKLKLSGATDARAEQSHHRQRSHSISPQRSRFVAPRRRAGGGGFDGPASWKKGSSSFKHSSPLQRESRSSDPQKDVEGGVGRGPSAVNFTDGQYLNILQSMGQSVHVLDLNGRIIYWNRSAENLYGYPAEEALNQDGIELLVEPGDFALANDIVKRVTMGEKWMGQFPAKNKMGEKFLAVATNTPFYDDDGSLVGIICVSSDSQPFLELRVPFSGVKQFETDSGSSNLKSSITAKLGLDSQQPLQVNLASKLSNLASKVSNKMKSRIRTGDNNIDREGGSAESHHSEHSFSDSVLYDQREDAASSGASTPRGDVQPSPFGVCSHMEDKYQGKQLRDSGDEGEGKPIHKSLTSKAEAWIQKKTMSWPWKANERDGSEARNVRVAWPWLQNDQENEPVQRKTPSGVRPESQTVESNRPVNNEASGSWSSSFNVNSTSSASSCGSASSCAVNNKVDMDSDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSEDVIMSFRQEVSVMKRLRHPNVLLFMGAVTSPQRLCIVTEFLPRGSLFRLLQRNTAKLDWRRRVHMALDIARGVNYLHHCNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELTTEKIPWESLNSMQVIGAVGFMNQRLEIPKDVDPKWAAIIESCWHSDPACRPTFQELLERLRELQRQYALQFQAARSAGGENTQKES 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2560 773 Pfam Protein tyrosine and serine/threonine kinase 495 747 IPR001245 GO:0004672|GO:0006468
Dere03g2560 773 MobiDBLite consensus disorder prediction 417 454 - -
Dere03g2560 773 ProSiteProfiles PAS repeat profile. 117 188 IPR000014 -
Dere03g2560 773 FunFam PAS domain-containing protein tyrosine kinase family protein 573 764 - -
Dere03g2560 773 PRINTS Tyrosine kinase catalytic domain signature 718 740 IPR001245 GO:0004672|GO:0006468
Dere03g2560 773 PRINTS Tyrosine kinase catalytic domain signature 655 665 IPR001245 GO:0004672|GO:0006468
Dere03g2560 773 PRINTS Tyrosine kinase catalytic domain signature 569 582 IPR001245 GO:0004672|GO:0006468
Dere03g2560 773 PRINTS Tyrosine kinase catalytic domain signature 674 696 IPR001245 GO:0004672|GO:0006468
Dere03g2560 773 PRINTS Tyrosine kinase catalytic domain signature 608 626 IPR001245 GO:0004672|GO:0006468
Dere03g2560 773 Coils Coil 740 760 - -
Dere03g2560 773 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672|GO:0006468
Dere03g2560 773 SUPERFAMILY Protein kinase-like (PK-like) 483 747 IPR011009 -
Dere03g2560 773 Gene3D Phosphorylase Kinase; domain 1 488 572 - -
Dere03g2560 773 MobiDBLite consensus disorder prediction 355 376 - -
Dere03g2560 773 SUPERFAMILY PYP-like sensor domain (PAS domain) 121 229 IPR035965 -
Dere03g2560 773 MobiDBLite consensus disorder prediction 27 112 - -
Dere03g2560 773 MobiDBLite consensus disorder prediction 415 454 - -
Dere03g2560 773 MobiDBLite consensus disorder prediction 291 322 - -
Dere03g2560 773 Coils Coil 6 26 - -
Dere03g2560 773 SMART serkin_6 495 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g2560 773 MobiDBLite consensus disorder prediction 290 380 - -
Dere03g2560 773 Pfam PAS fold 120 227 IPR013767 GO:0006355
Dere03g2560 773 Gene3D PAS domain 129 232 - -
Dere03g2560 773 FunFam PAS domain-containing protein tyrosine kinase 488 572 - -
Dere03g2560 773 CDD STKc_MAP3K-like 501 747 - -
Dere03g2560 773 ProSiteProfiles Protein kinase domain profile. 495 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g2560 773 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 228 753 - -
Dere03g2560 773 Gene3D Transferase(Phosphotransferase) domain 1 573 773 - -
Dere03g2560 773 CDD PAS 128 229 IPR000014 -
Dere03g2560 773 NCBIfam PAS domain S-box protein 120 229 IPR000014 -
Dere03g2560 773 SMART pas_2 119 186 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2560 Dere-ChrDere03 40008006 40014905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2560 1 769 MAP Kinase Kinase Kinase AT3G06620 62.341 0.0 967
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Dere03g2560 PK_Tyr_Ser-Thr 2.1e-68 CL0016