Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2547 ATGGGGATCCAATCTCTCAACCCTTATGCAAAGGAGTCGGAATTGTGTCAGAATTTTGAAAGGCTTGCTCTGAAAAAGCATATACTTTTTTATTGGAATGGTGGAGTTCCTTTTGATCTAGGTGTAAAGCTGCACAAATTATATATATTAGGAATTTGGTTTGATATCTTTGCTGTCTTGATGTTGACAAGTGTTATTAATATTGACAACGACTTTGTAATTCAATCTATGCCAGCAGCACATCTTGATACGGTTGTTTCCATTCTTGCTGTTTGTCGGGAAGTAGGAACTGAAACCAAGAAGTGGAGCTTAAATGCTGCTGTCGTACCTTTTGGTGCTGCTGCCTGCAAGAATTTCAGCTCTTCCATCTATATAACCATCGCTGGTTATCTTCCTTCAAAGGGAAAGGAGAGGAAAAATCCCATTACGAACCTGCGATTTGGGGTTGAAATGGCATCATCTCTGGTCTCAAACCCTGTGACGAACACGGACCGGTCACGTGACCCCTCCAAGAGGAAGAAGAAGAAGAAAGCTCATCTCAAGCAACAGCAAGAAGATCAGAACCACATCAAATGGAAATCCCAAGCCCAGCAGCAAATCTACTCCTCCAAGCTCCACCAAGCTTTAGCCAGAGTCAACCTCGGCCCTTCCAGCTCCGCTGCCGGCGACGCCCCGCGCCGCGGTAAAGCCGTCCGTGAAGCCGCCGATAGAGTCCTCGCCGTCACTGCCAAGGGGAGGACACGATGGAGCCGAGCCATCCTGACTAACCGGCTCAAGCTCAAGTTCAGGAAGCACAAGAGGCAGAGGGTCACGGCCACAGCCGCCGCCGCCGGCACAGTCCGGGCGAAGAAGCCGAGAGTGAGCGTCTTCCGGCTGAAGGGGAAGAGTTTGCCGGCGGTGCAGAGGAAAGTGAGGTTTCTGGGCCGGTTGGTCCCCGGCTGCCGGAAACAACCGGTGCCGGTGATCTTAGAGGAAGCCTTTGATTACATATCAGCACTGGAGATGCAGGTCCGAGCGATGAGCGCGCTCGCTGACCTTCTCTCTGGATCAGCTGCTTCCGGCGGCTCGAGTTCCTCCGCGCCAGCTAGTTGA 1092 0.5147 MGIQSLNPYAKESELCQNFERLALKKHILFYWNGGVPFDLGVKLHKLYILGIWFDIFAVLMLTSVINIDNDFVIQSMPAAHLDTVVSILAVCREVGTETKKWSLNAAVVPFGAAACKNFSSSIYITIAGYLPSKGKERKNPITNLRFGVEMASSLVSNPVTNTDRSRDPSKRKKKKKAHLKQQQEDQNHIKWKSQAQQQIYSSKLHQALARVNLGPSSSAAGDAPRRGKAVREAADRVLAVTAKGRTRWSRAILTNRLKLKFRKHKRQRVTATAAAAGTVRAKKPRVSVFRLKGKSLPAVQRKVRFLGRLVPGCRKQPVPVILEEAFDYISALEMQVRAMSALADLLSGSAASGGSSSSAPAS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2547 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 304 349 IPR036638 GO:0046983
Dere03g2547 363 MobiDBLite consensus disorder prediction 158 197 - -
Dere03g2547 363 CDD bHLH_AtIBH1_like 291 344 IPR044549 GO:0006355
Dere03g2547 363 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 194 347 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2547 Dere-ChrDere03 39838217 39843790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2547 189 351 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 60.694 4.70e-54 176