Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2545 ATGGAGGAAAAGAGAGAGGAAGAAGAGAGCAACAAGAGTTGGAGCATGGCAAACTCTGTGGCATTTTCCGACGAGATTCCGATGATGAGCTTTCCCCCACCTCCTGCTTTTTCTAACATCTCTGACATGATGATGATGCCTCTATCTGACAATGATTACAAGCCTAATTACTCCTCTGCCTTCTTGGATTTGCTGGCTCTCCAAGATTACAGCCCTTCCTTGTTCGATTGCCTCCCTTCCTTCGCCACCCACTGCCCCCTTCCGTCGCCGGCGAGTTCCAACGTCCCCGAATCCTCCGAGGTCTTGAACACTACTCCGGCATCCCCCAATTCCTCCTCTATCTCCTCTTCCTCCAATGAAGCCCCTCTCACCAATATCATAATGGAGCAGCCCCGCGCTAGCAGTAAAGAAGGGAACGAACTCGAACCCGAGGATGAAGAGCACGGAGAAGCAGCCGGAGGAGAGGACCCCGATCAACACAAGACTAAGAAACAGCTGAAACCGAAAAAGAAGAACCAGAAGAAGCAAAGAGAGCCCAGATTTGCGTTCATGACAAAGAGCGAAGTGGATCACCTAGACGATGGCTATAGGTGGCGCAAGTACGGCCAAAAAGCTGTAAAAAACAGCCCCTACCCCAGGAGCTATTATCGTTGCACCACCGCGGGATGCGGCGTGAAGAAGCGGGTGGAGCGGTCGTCGGAGAACTCGGCGATCGTGATGACGACGTACGAGGGGCAGCACACCCACCCGAGTCCGGTGACGTGCCGGGCGAGCCTGGGGTTCGGAGGCACGAGCGGTGGTGGGCTTGGTTCGGCACACTATGTAGTGCCACAAGCAAAGCATCAGCATCAGCATCAGCATCATCAGCAGCAACAACAGCATGTGCAACAACAAGCGGCTGCTTTGTTGTATAGCTCAGCCCCACTACTTCCTTTGAGTATTAGCCCATCCTCTCCTAGTTATAAGGATCCCACGTCGTCGTTTTCTGGCTTGCTTCAAGACAACCCTCATCATCATCATCGTCATGACGTAGGTTTTAGACCATCGTCGTCTCATCCTCAAGCTACTTTGTCAAGGGACAATGGGCTTCTTCAGGACATTATTGTGCCAACGCAGATGAGGAAGGAGGAGAAAGAAGAAGATGAACAAGAAGAAGAAAAATAG 1164 0.5189 MEEKREEEESNKSWSMANSVAFSDEIPMMSFPPPPAFSNISDMMMMPLSDNDYKPNYSSAFLDLLALQDYSPSLFDCLPSFATHCPLPSPASSNVPESSEVLNTTPASPNSSSISSSSNEAPLTNIIMEQPRASSKEGNELEPEDEEHGEAAGGEDPDQHKTKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSENSAIVMTTYEGQHTHPSPVTCRASLGFGGTSGGGLGSAHYVVPQAKHQHQHQHHQQQQQHVQQQAAALLYSSAPLLPLSISPSSPSYKDPTSSFSGLLQDNPHHHHRHDVGFRPSSSHPQATLSRDNGLLQDIIVPTQMRKEEKEEDEQEEEK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2545 387 ProSiteProfiles WRKY domain profile. 187 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere03g2545 387 SUPERFAMILY WRKY DNA-binding domain 184 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere03g2545 387 SMART WRKY_cls 192 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere03g2545 387 MobiDBLite consensus disorder prediction 89 181 - -
Dere03g2545 387 MobiDBLite consensus disorder prediction 315 333 - -
Dere03g2545 387 Gene3D WRKY domain 176 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere03g2545 387 MobiDBLite consensus disorder prediction 89 132 - -
Dere03g2545 387 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 95 294 IPR044810 GO:0003700
Dere03g2545 387 MobiDBLite consensus disorder prediction 315 387 - -
Dere03g2545 387 FunFam WRKY transcription factor 57 178 252 - -
Dere03g2545 387 Pfam WRKY DNA -binding domain 193 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2545 Dere-ChrDere03 39786096 39787632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2545 162 377 WRKY Transcription Factor Family AT2G47260 48.636 1.88e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dere03g2545 WRKY 3.6e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g2545 03 39786096 39787632 Dere03g2545 03 39786096 39787632 ECH