Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2544 ATGAAAGTCAAGACTCAAGAACGAGAAGTTACTGCTATATCCGTGTCCGCAACGTCCAATTCGCAAGAACACTGGACAAGTCTATTTGGTCTTCTTCTCGCAGGTTTCACTCTGCTAGCCAAGCTGGATAGGCACAGAGGAGACCGCCATGGCAGCTCTCACCATCGTCACTCCAGGGGTCCCTCTCGTTTCTCCAATGATCCCGTGAACTATCATAACGCCAGCCGTAGCCCACCCAACTTCCGCTCCGCCGGAGCCGGTGGTCATTACCGTACGTTGGACAGTCCGCCGCGTCGGTCTCCCGGCAGAGGTGGAAGGTTCCGGCCACTGGCTGGTCCCGATGGTTTCGGGTTTAACAATAATCCAGTGCCACCACACTCTGGGCAGAAACGAGGGTTTCCCTTTTCCGGGCGTGGAGGGTCGCCAGATCGATTTGATGGTAGAAGTTTTGCAAAACTTTTTGTTGGATCTGTTCCCCGGACAGCCACTGAAGAAGATATTCGCCCTTTGTTTGAAGAACATGGGAATGTGATAGAGGTTGCTCTGATCAAAGATAGAAAAACTGGACAACAACAAGGTTGTTGTTTCATTAAGTATGCTACTTCAGAAGAAGCTGACCAGGCAATTAGAGCGTTGCACAATCAACATACTCTTCCTGGAGGTGTAGGTCCGATCCAAGTGAGATATGCTGATGGTGAACGAGAACGCCTTGGTGCAGCTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCCACAGTAGATGAAGTTGAGGAAATTTTCTCAAAATATGGGCGGGTTGAAGATGTTTATCTTATGCGTGATGAGATGAAGCAAAGCCGTGGATGCGGTTTTGTTAAATACTCCCACAGAGATATGGCATTGGCTGCTATAAATGCACTTAATGGAAATTATACAATGAGAGGTTGTGATCAACCATTAACTGTCCGGTTCGCTGATCCCAAGAGACCTCGGCAAGGAGACTCAAGGGGTCCTGCATTTCCCCGTCCGGGATTTGGTCCTAGATTTGAAGCACCAGGCCCACGTCCTCCATCCAATGTTAATGACCCTATGGGTGATCATATCCCACCTCCTAATGCTTGGCTTCCAATGTATCCACCCAATATGGGACCATCCTCTAATGCTGGTCCTCATGGCATGGGGCCTCTGTTACTTTCAAGATCTGGTGGTCCAGCAATGCCTACAAATGCAGGTGGTCCTATTGGTGGGATTGGAGGCCCCATTGATGGTCCTTTTCAAGGGCAGGCTTTGTCATCTATATCACAACAGAATTTCAACCAGCCAATCCAACAAATTCCACCGGTTAGCCAACAAATGTCACCATTGCAGAAACCTATGCAGTCACCTCAGGACGTGCCACCTTCCGTCCAGTTGTATCCTCAGGCGCCAATGCCTTACTTACAGACTCCAATGTCTCTTTCATCAGTTAGGCAGGTTGCCCTGCCACAACCTTTTTCATCTGGGGTTCCTCTTCCCTCACTGCAAGTACCTGGCATAAATGGACAGTTACCAGCTTCCCAGCATCAAACTCAACAGAATGCTTTGTCTGCTGCAATGAGTCAGAGCCCTCTTGATACAAGTTTGCAATCTAACCCGGCATTAAATACCGCAAATCAACAGAGACCTCCTGCCCCCTTGCAGCAGCAGCAGCAGCAGCATCTTAAGCCTCTTCAGCAGTCCCCATCTCAGTTGGCTCAGATGTTGTCACAACAAACTCACTCTTTGCAGGCAAGCTTTCATTCATCTCAGCAGGCCTTTTCCCAGCTTCAACAACAAGTACAAATGATGCAACCTTCTAGTCATGATTTAGCATTGCAGCAAAATGCTGAAGCTGCTAAAAAGCAGTCTCAATGGTCTGGGACTGTTCCAATGGCGGTGACCAGCACTCCTGCTGCTACACCTGCCGCAGATGTTCCTTCATCCGCATCTGGTTCTGCTCCTGCAATAAACCAGAATGTGGCTCTTGCAAAATGCAGTTGGACAGAGCATACATCTCCTGAGGGCTTCAAGTATTACTATAATAGTGTCACTGGTGAAAGTCGGTGGGAGAAACCAGAGGAGTTTACATTATATGAAAGGCAAAAGCAGCAGCAAATGCCATCCATTCAGCAGTCTCAAACTCAGTCACAACCACCAGTATTATCTGCCCAGCAAGTTTCACAATTGCAACAGGTGCTGCCTCAAGGTCAAGTACAGATCCTCCACCAGCAACAGATCCAGCAGCCTTCTTTGTCTTCTTCATATCAGGCATATGGAACAGGTCATCAAAATGTTCAGGAAGTTGGTTATACAACAGGTACGTCTGTTGGTGATCCTGCACGCTTCCCACAGGGGATTCATCCTTCACAGGAGTGGATGTGGAAAAATAAGCCAGCAGGAAACTGA 2409 0.4828 MKVKTQEREVTAISVSATSNSQEHWTSLFGLLLAGFTLLAKLDRHRGDRHGSSHHRHSRGPSRFSNDPVNYHNASRSPPNFRSAGAGGHYRTLDSPPRRSPGRGGRFRPLAGPDGFGFNNNPVPPHSGQKRGFPFSGRGGSPDRFDGRSFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDRKTGQQQGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAAEYKLFVGSLNKQATVDEVEEIFSKYGRVEDVYLMRDEMKQSRGCGFVKYSHRDMALAAINALNGNYTMRGCDQPLTVRFADPKRPRQGDSRGPAFPRPGFGPRFEAPGPRPPSNVNDPMGDHIPPPNAWLPMYPPNMGPSSNAGPHGMGPLLLSRSGGPAMPTNAGGPIGGIGGPIDGPFQGQALSSISQQNFNQPIQQIPPVSQQMSPLQKPMQSPQDVPPSVQLYPQAPMPYLQTPMSLSSVRQVALPQPFSSGVPLPSLQVPGINGQLPASQHQTQQNALSAAMSQSPLDTSLQSNPALNTANQQRPPAPLQQQQQQHLKPLQQSPSQLAQMLSQQTHSLQASFHSSQQAFSQLQQQVQMMQPSSHDLALQQNAEAAKKQSQWSGTVPMAVTSTPAATPAADVPSSASGSAPAINQNVALAKCSWTEHTSPEGFKYYYNSVTGESRWEKPEEFTLYERQKQQQMPSIQQSQTQSQPPVLSAQQVSQLQQVLPQGQVQILHQQQIQQPSLSSSYQAYGTGHQNVQEVGYTTGTSVGDPARFPQGIHPSQEWMWKNKPAGN 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2544 802 ProSiteProfiles WW/rsp5/WWP domain profile. 668 695 IPR001202 GO:0005515
Dere03g2544 802 PANTHER RNA BINDING PROTEIN 95 621 - -
Dere03g2544 802 MobiDBLite consensus disorder prediction 507 579 - -
Dere03g2544 802 SMART ww_5 663 695 IPR001202 GO:0005515
Dere03g2544 802 SUPERFAMILY RNA-binding domain, RBD 241 342 IPR035979 GO:0003676
Dere03g2544 802 SUPERFAMILY RNA-binding domain, RBD 134 236 IPR035979 GO:0003676
Dere03g2544 802 SUPERFAMILY WW domain 667 699 IPR036020 GO:0005515
Dere03g2544 802 MobiDBLite consensus disorder prediction 63 80 - -
Dere03g2544 802 SMART rrm1_1 243 318 IPR000504 GO:0003723
Dere03g2544 802 SMART rrm1_1 152 228 IPR000504 GO:0003723
Dere03g2544 802 MobiDBLite consensus disorder prediction 443 463 - -
Dere03g2544 802 Gene3D - 236 330 IPR012677 -
Dere03g2544 802 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 322 IPR000504 GO:0003723
Dere03g2544 802 MobiDBLite consensus disorder prediction 320 355 - -
Dere03g2544 802 Gene3D - 663 709 - -
Dere03g2544 802 MobiDBLite consensus disorder prediction 443 469 - -
Dere03g2544 802 FunFam Flowering time control protein FCA 238 328 - -
Dere03g2544 802 ProSitePatterns WW/rsp5/WWP domain signature. 668 693 IPR001202 GO:0005515
Dere03g2544 802 Pfam WW domain 667 693 IPR001202 GO:0005515
Dere03g2544 802 MobiDBLite consensus disorder prediction 340 354 - -
Dere03g2544 802 FunFam flowering time control protein FCA isoform X2 145 237 - -
Dere03g2544 802 MobiDBLite consensus disorder prediction 775 802 - -
Dere03g2544 802 CDD WW 665 695 IPR001202 GO:0005515
Dere03g2544 802 Gene3D - 144 235 IPR012677 -
Dere03g2544 802 MobiDBLite consensus disorder prediction 598 629 - -
Dere03g2544 802 MobiDBLite consensus disorder prediction 500 579 - -
Dere03g2544 802 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 153 215 IPR000504 GO:0003723
Dere03g2544 802 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 244 310 IPR000504 GO:0003723
Dere03g2544 802 PRINTS Paraneoplastic encephalomyelitis antigen family signature 303 320 IPR002343 GO:0003723|GO:1990904
Dere03g2544 802 PRINTS Paraneoplastic encephalomyelitis antigen family signature 151 166 IPR002343 GO:0003723|GO:1990904
Dere03g2544 802 PRINTS Paraneoplastic encephalomyelitis antigen family signature 247 262 IPR002343 GO:0003723|GO:1990904
Dere03g2544 802 PRINTS Paraneoplastic encephalomyelitis antigen family signature 262 274 IPR002343 GO:0003723|GO:1990904
Dere03g2544 802 MobiDBLite consensus disorder prediction 46 125 - -
Dere03g2544 802 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 151 232 IPR000504 GO:0003723
Dere03g2544 802 MobiDBLite consensus disorder prediction 700 721 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2544 Dere-ChrDere03 39766123 39779783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2544 149 403 Eukaryotic Initiation Factors Gene Family AT1G71770 24.723 1.47e-14 75.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g2544 03 39766123 39779783 Dere03g2544 03 39766123 39779783 ECH