LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere03g2523	ATGGATATGGACATGGACATGGCAGAAGGAGGAAGAGGAGGAAGCAAGCTCCAGAACGACGACGAATTGGACCTCAGAAGAGGGCCCTGGACTGTGGATGAGGACCTCACCCTCATCAATTACATTACCACTCACGGGGAAGGTCGCTGGAACTCCCTCGCTCGCTCTGCTGGCCTCAAGCGAACTGGTAAGAGCTGCAGATTGAGATGGCTCAATTACCTTCGACCCGACGTTCGACGTGGAAACATCACCCTCGAAGAGCAGCTCGTGATTCTTGAGCTTCATTCTCATTGGGGAAACAGATGGTCGAAAATCGCACAGTTCTTGCCGGGGAGAACCGACAACGAGATCAAGAACTACTGGAGAACACGAGTCCAGAAGCACGCCAAGCAGCTGAAATGTGACGTGAACAGCAAGCAATTCAAGGACGCCATGCGCTACCTTTGGATGCCCAGGCTTGTGGAGCGCATTCAAGCTTCCACCACCCCTGTTACCGCCGCGGGCTTGGCTTCTCCGGCGATACCAACCACCACCACTGGCACTCCCAACAACGCATATAATTATACCAATCCCGAGTTTGGAGGCTCTCAGATTACATACAGTAATTATACCACGGAGAATAGCAGCAAGGCGGCTTCGTCGGACTCGTTCGGGTCGACTCAGGTCTCTCCGGTCTCGGACTTGTCGGATTATTATTACGGGAATGTCCCAGTTGGTAATAAGGCTAACCTTAATCCGGATTACTGCCAAACTGCTCAATTGAGCCACTCGGATTGCATCACCAGCTTGGATATGCAAACCGTGGAGCCAAACAGTAACGGCAACCAACAGTATTGGGTTCAGAGTGCCGGGGACACGTCGGACAATTTCTGGAATGTTGAAAACATGCTGTTTTTACAGCAGCAGCTCAGTGACAACATGTAA	924	0.5162	MDMDMDMAEGGRGGSKLQNDDELDLRRGPWTVDEDLTLINYITTHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLVILELHSHWGNRWSKIAQFLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQASTTPVTAAGLASPAIPTTTTGTPNNAYNYTNPEFGGSQITYSNYTTENSSKAASSDSFGSTQVSPVSDLSDYYYGNVPVGNKANLNPDYCQTAQLSHSDCITSLDMQTVEPNSNGNQQYWVQSAGDTSDNFWNVENMLFLQQQLSDNM	307

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere03g2523	307	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	24	74	IPR017930	-
	Dere03g2523	307	Pfam	Myb-like DNA-binding domain	27	74	IPR001005	-
	Dere03g2523	307	Pfam	Myb-like DNA-binding domain	80	123	IPR001005	-
	Dere03g2523	307	MobiDBLite	consensus disorder prediction	1	22	-	-
	Dere03g2523	307	Gene3D	-	27	79	-	-
	Dere03g2523	307	FunFam	Myb transcription factor	27	79	-	-
	Dere03g2523	307	FunFam	MYB transcription factor	84	147	-	-
	Dere03g2523	307	CDD	SANT	84	123	IPR001005	-
	Dere03g2523	307	ProSiteProfiles	Myb-like domain profile.	22	74	IPR001005	-
	Dere03g2523	307	Gene3D	-	84	147	-	-
	Dere03g2523	307	SMART	sant	26	76	IPR001005	-
	Dere03g2523	307	SMART	sant	79	127	IPR001005	-
	Dere03g2523	307	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	75	129	IPR017930	-
	Dere03g2523	307	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	22	228	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Dere03g2523	307	ProSiteProfiles	Myb-like domain profile.	75	125	IPR001005	-
	Dere03g2523	307	CDD	SANT	29	74	IPR001005	-
	Dere03g2523	307	SUPERFAMILY	Homeodomain-like	24	121	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere03g2523	Dere-ChrDere03	39581880	39583375	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere03g2523	23	172	MYB Transcription Factor Family	AT1G48000	74.667	9.42e-85	253

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Dere03g2523		Myb_DNA-binding	1.7e-14	CL0123