Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2507 ATGCCAGCATCATGGCCGTTCAACCTACCGAAGCCCACACAATGTTATAGCCCAGCCCACGGCTCATTGCATTACCCACCAAATTTTCCTCCTGGGCGGAACGAGATAGCTGAATCTATATTGTCGGCTCCTTTAACCCTAACCTACAAATCCGTTCAAGGTTTCCCTCATTTCTTCTTTAATATTGTCCCTTCATCGAATCATAGTCAGTGGCAGAGGACGGAAAAGCAATCGGCATTATGCGTGCTGATTCGTATAGGGATAACCGCAGTTGAAACTCTTGCATTTTCACCCAGGTATTATAACTTCAACAATCTTTATTTGATGAGATTAATGTTTCTTGATAAATTATTTTCTGAGGTTTATGATATGATATACATATTATACATGGCAACAGCAGAGGCAGCTCCGGCTGCTCTTGGTCCACGATATGCACCTGATGATCCCACCCTTCCAAAACCTTGGAAGGGATTGATTGATGGAAGCACGGGTCTATTATACTATTGGAACCCTGAAACCAACATCACCCAATATGAAAAGCCGACTGCGTTGCCACCACCCTTGCCTGCAGGACCACCTCCCACAGTATCTACACCCAAGCTGGCTCCCATACCAGGGGCTCATTCAATACCACCTGGTGGTGTGGTGGCACAGCATGGACAGCAGTTATTACAAGCCTCTCATCAACAGGGACAGCAAGTGAGCCACCTATCCCAACAGCATGGGCAAACAGTGCCACAACAGCAGAGTCCCCAGGTGGCACAGGTCACTCAGCAGCAGCCTTCTCAAGTGGCACAAGCTGGACAGCAACAAAGTTCACAGTCAGTGCAGTCCATGCCACAACCGAGTTTGCAGCAAGTCAGACAGCAGCAGATGTTGCAGCCTCTGAGTCAGCAAATTCCACCGCAGCAAATGCATCATCAGATGCCACAACAAGCCATTCAGTCACAACATTTTGGGCAAGGAGCCTCCCAGGATCATGGTTCATATATGGTACAGCAACAGGCTCATCAATTCACTCACCAGAACCTACATTACATGCCATATTCACATAGTATGCATTCAACTGGGCAGCAAAATTCCCAACCAATTCAGCTTAACACACATGGTCAACCATTGGAAAATCAACAAGAATTTAAACCAGCATTCTCAAAGATAGATGAAGTAGATTTCAAAAATGGAAGCCAAGTTGGACTTTCACCATCCCAGTATCAACAAAAAAGTTCCTTGCCTGTGCAAAACAATCAGAACATTCCTGCGGGAATTAGCTCTGTCCAGGTGCCACGTGTAGGTGCTAATGCAGGCCAACTGCAGCAGTTTGGGGGCATATCAGGCAACATGCAACAACCTTCTGCAGCAATGCATTCACATCAGGGTACTTCTGATTTAGTTTATCAACATGGTCATAGCTTTCAAAACCAGATGGCCCCAGGAATGATGCATGGTCAGCCATCTAATGTCCTTTCTGGTGACCTAAAGATGGGCCATGAGGATAACTTACGTGGTAGAGCTGCGAATCAATATTACTATAACTCTAGCAAAGAGGCGCCATCAGTGGGTTCTCAGCAGCCAAATTTGGCACCAATACCTATTTCTAGAAATCAGCCGGATATGAGGATTGGCAGTTCCCCTTTTCAAAATGTAATGCCTAGTGGAAATGGGTTCAGTGGTGTCCCAGGGCATGGGATGCATAACATGTTTAATCCTCCAATAGGAGGACCTCCACCACTTGCAAGTAACTCTTTAACAAGGCCTCAAGTAACTGATCTCTCGCCTGCTGAAATTTACTGTCAGCAACATGAAGTTACAGCAACGGGTGACAATGTTCCTCCCCCTTTCATGACATTCGATGCTGCTGGGTTTCCTCCAGAGATTTTGAGAGAGGTGCGATATCTGCTCCAGAGCAAGGAGCATATGTCGTACGCTGCAGCTATTGTCACACTTACATGTGCAACTACTATCCTGATTTTTGGAGCTTGCAAAATGGATGGTTGGAGCCTTTCTTGGGCATCTTCTAGAAGGGTGGAATTGGATGTACTCTATGCTCATGGTGCTTATCGCTTGCACGTGTTCTCATTTCAGATATATTCTGCTGGCTTCTCAACTCCAACACCTATTCAAGCTCAAACATGGCCTGTTGCCCTACAGGGTAGGGACATAGTGGCTATTGCCAAAACAGGCTCTGGGAAAACATTAGGTTATTTAATACCTGCATTCATGATTCTTAGACAGCGGCACAACAATCCTCTGAATGGCCCCACAGTCTTGGTATTGGCTCCAACACGTGAACTTGCAACACAGATTCAAGATGAGGCCATAAAATTTGGCCGTTCTTCTCGGGTCTCTTGCACGTGCTTGTATGGTGGAGCACCCAAAGCTCTTCAGCTGAAAGAGTTAGACCGTGGAGCAGACATTGTTGTTGCTACGCCTGGTCGGCTCAACGACATACTTGAAATGAAGAAAATTGATTTTGGGCAGGTTTCGCTTCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATACCACCACGGAGACAAACTCTTATGTACACAGCTACCTGGCCAAAAGAAGTGCGAAAAATTGCAGGTGATCTTCTTGTGAATCCTGTCCAGGTTAACATTGGAAATGTTGATGAGCTTGCTGCAAATAAAGCTATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAGAGGCGTTTAGAGCAGATCATCAGATCCCAAGAACGAGGTTCTAAGGTGATAATATTTTGTTCCACAAAGAGGTTATGTGATCAGCTTGCTCGTAGCATTGGCCGCAATTTTGGTGCTGCTGCTATTCATGGAGACAAATCTCAAGGTGAAAGAGACTGGGTTTTAAATCAGTTTAGGACTGGGAAGTCACCAATTCTGGTTGCTACTGATGTTGCTGCCCGTGGGCTTGACATTAAGGATATAAGGGTTGTAATCAACTATGATTTCCCCACTGGAATTGAGGACTATGTACACCGTATTGGACGAACAGGAAGGGCTGGAGCCACTGGAGTGTCATACACCTTTTTCTCTGAGCAGGACTGGAAACACGCAAGTGACTTGATTAAAGTTTTGGAGGGTGCTAACCAGCTTGTGCCTCCAGAGTTACGGCAGATGGCTTTGCGTGGGCCAGCTAACTTTGGAAAGGACCGGGGTGGAATGAGCCGTTTTGACTCTGGTGGTGGTCGCTGGGACACTGGCGGCCGTGGTGGAATGAGAGATGGTGGCTTTGGCAGTCGTGGTGGAATGAGAGATGGTGGCTTTGGTGGTCGTGGTGGCATGAGGGATGGTGGTGGGTTTGGTGGTCGTGGTGGCATGAGGGATGGTCCTAGTGCACAAGGTGGAAGAGGTGACTTCTTTTCTGGTAGAGGCAATAGAGGTCGTGGATTGGGTGGCCCACGTGGTGGTCATGCCGGTTGGGGTAGGGGTGACCGTGGCCCACATGATCGTTACAATGTGGACGGGCGAGGACGAGGGCGTGGTCGTGGGCGTTTTGACAACAGAAGAGATGTTGGATACAGGAATAGGGGCAGAAGTTACAGTCGCAGCCCTGAAAGGGTCCGAACATGGGATTATAGCAGAAGCCGAAGCAGAAGCAGAAGTAGAAGTAGAAGCTGGAGTAGTGGTCGTAGTCGGAGCCGCAGCTGGTCTCGTGGTCGGAGTCGCAGTTACAACCGTAGCATTAGCCGGAGTCGCAGCCGAAGCCGTGGCCGAAGTAGTCGAAGTTACAGCCGCAGTCGCAGTCGAAGCCACAGCTATGATAGATATGAGAGGTCAGATCGGCAGATATCTGATCAGAATGAGCATTTTGCGCGAGACCTAGAAGCTTCTGAACCAAGAATGCTCCCTATGTCTCCCAGCAGCCAGGGGAACTCACTTCGGGAGACTGAACATTTGGAGCAGCAACCAGCTGTTGGGAGTATTGAGCTGGTTAATCCAGAGGCTATAGTAGACCCTTACGGTGAATCAGTTCCTAATGTCTGA 4038 0.477 MPASWPFNLPKPTQCYSPAHGSLHYPPNFPPGRNEIAESILSAPLTLTYKSVQGFPHFFFNIVPSSNHSQWQRTEKQSALCVLIRIGITAVETLAFSPRYYNFNNLYLMRLMFLDKLFSEVYDMIYILYMATAEAAPAALGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNITQYEKPTALPPPLPAGPPPTVSTPKLAPIPGAHSIPPGGVVAQHGQQLLQASHQQGQQVSHLSQQHGQTVPQQQSPQVAQVTQQQPSQVAQAGQQQSSQSVQSMPQPSLQQVRQQQMLQPLSQQIPPQQMHHQMPQQAIQSQHFGQGASQDHGSYMVQQQAHQFTHQNLHYMPYSHSMHSTGQQNSQPIQLNTHGQPLENQQEFKPAFSKIDEVDFKNGSQVGLSPSQYQQKSSLPVQNNQNIPAGISSVQVPRVGANAGQLQQFGGISGNMQQPSAAMHSHQGTSDLVYQHGHSFQNQMAPGMMHGQPSNVLSGDLKMGHEDNLRGRAANQYYYNSSKEAPSVGSQQPNLAPIPISRNQPDMRIGSSPFQNVMPSGNGFSGVPGHGMHNMFNPPIGGPPPLASNSLTRPQVTDLSPAEIYCQQHEVTATGDNVPPPFMTFDAAGFPPEILREVRYLLQSKEHMSYAAAIVTLTCATTILIFGACKMDGWSLSWASSRRVELDVLYAHGAYRLHVFSFQIYSAGFSTPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLIPAFMILRQRHNNPLNGPTVLVLAPTRELATQIQDEAIKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELAANKAITQYVEVVPQMEKQRRLEQIIRSQERGSKVIIFCSTKRLCDQLARSIGRNFGAAAIHGDKSQGERDWVLNQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHASDLIKVLEGANQLVPPELRQMALRGPANFGKDRGGMSRFDSGGGRWDTGGRGGMRDGGFGSRGGMRDGGFGGRGGMRDGGGFGGRGGMRDGPSAQGGRGDFFSGRGNRGRGLGGPRGGHAGWGRGDRGPHDRYNVDGRGRGRGRGRFDNRRDVGYRNRGRSYSRSPERVRTWDYSRSRSRSRSRSRSWSSGRSRSRSWSRGRSRSYNRSISRSRSRSRGRSSRSYSRSRSRSHSYDRYERSDRQISDQNEHFARDLEASEPRMLPMSPSSQGNSLRETEHLEQQPAVGSIELVNPEAIVDPYGESVPNV 1345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2507 1345 MobiDBLite consensus disorder prediction 1265 1294 - -
Dere03g2507 1345 SMART helicmild6 935 1019 IPR001650 -
Dere03g2507 1345 MobiDBLite consensus disorder prediction 514 584 - -
Dere03g2507 1345 MobiDBLite consensus disorder prediction 1233 1263 - -
Dere03g2507 1345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 751 1035 IPR027417 -
Dere03g2507 1345 Pfam DEAD/DEAH box helicase 704 874 IPR011545 GO:0003676|GO:0005524
Dere03g2507 1345 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 914 1058 IPR001650 -
Dere03g2507 1345 MobiDBLite consensus disorder prediction 220 330 - -
Dere03g2507 1345 SMART ww_5 150 183 IPR001202 GO:0005515
Dere03g2507 1345 Pfam Helicase conserved C-terminal domain 911 1019 IPR001650 -
Dere03g2507 1345 Gene3D - 145 183 - -
Dere03g2507 1345 SUPERFAMILY WW domain 143 183 IPR036020 GO:0005515
Dere03g2507 1345 CDD SF2_C_DEAD 899 1028 - -
Dere03g2507 1345 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 683 1058 - -
Dere03g2507 1345 MobiDBLite consensus disorder prediction 182 200 - -
Dere03g2507 1345 MobiDBLite consensus disorder prediction 1061 1325 - -
Dere03g2507 1345 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 711 885 IPR014001 -
Dere03g2507 1345 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 831 839 IPR000629 -
Dere03g2507 1345 ProSiteProfiles WW/rsp5/WWP domain profile. 149 183 IPR001202 GO:0005515
Dere03g2507 1345 MobiDBLite consensus disorder prediction 1300 1316 - -
Dere03g2507 1345 FunFam ATP-dependent RNA helicase RhlB 889 1061 - -
Dere03g2507 1345 ProSitePatterns WW/rsp5/WWP domain signature. 155 181 IPR001202 GO:0005515
Dere03g2507 1345 SMART ultradead3 699 902 IPR014001 -
Dere03g2507 1345 MobiDBLite consensus disorder prediction 178 330 - -
Dere03g2507 1345 Gene3D - 590 889 IPR027417 -
Dere03g2507 1345 MobiDBLite consensus disorder prediction 1159 1216 - -
Dere03g2507 1345 Gene3D - 890 1060 IPR027417 -
Dere03g2507 1345 MobiDBLite consensus disorder prediction 514 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2507 Dere-ChrDere03 39229319 39236566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2507 695 1059 Eukaryotic Initiation Factors Gene Family AT3G19760 33.333 3.41e-63 219