Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2496 ATGGAGGCTAAATTTCGCGGGAAGAATCAGTATGTCTATGGACCTGTGGTGCCGGAAATGAAGGCGGTTGGGAAGAGGAGTTTGGAGTGGAATTTGGAAGACTGGAAATGGGACGGAGATCTTTTCACTGCCACTCCACTAAATTCAGTTCCATCTGATTGTAGAAATAGGCAGTCTTTCCCAGTTGATCCAGAAATTCCTGCAAAAGCTCATACATCTAACAGTTTATCTTCTAATTGGGATGATGTCAACCCAGAGAAAGGAAAGAGAGAATTGGAAAAAAGGAGGAGAGCTGTTGTAGCTGAAGGGGATGAGCTGAATGATGAAGGTGGCTGTCTTAATTTAAACCTTGGAGGTCAAATTTACCCTATCATGGAGGGGGATGAAAAAAGTGGAAAGAAGACAAAGATAGTTGGGAATGGGACTACTTCAAACCGAGCCGTTTGTCAGGTTGAAGATTGTAGGGCTGATCTTAGTAATGCAAAGGATTACCATCGTCGGCATAAGGTTTGTGATATGCATTCCAAGGCCAGCAAGGCACTGGTAGGAAATGTTATGCAGCGTTTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAATTTGATGAGGGGAAAAGAAGTTGCCGTAGGCGTTTGGCAGGCCACAACAGGAGGAGGAGGAAGACACATCCAGATGCTGTTGTTAACGGAAGCTCCCTGAATGACGAAAGGGGTAGTAGCTATCTGTTAACAAGTCTTCTACGTATTCTGTCTAATATGCACTCAAATGGCTCTGATCTTAATAGGGATCAAGATATTCTCTCTCATCTGCTAAGGAACCTGGCAAGCCTGGCTGGTACAATCAATGGAAGGAACATGGCCTCCTTATTGGAGGGATCTCAAGGTTTTGTGAATGTCGGGACATCTGAAACTGCCCAGAAGGTGCCTAATCTAAATTCAAATGGTGCTGAACCCTTCAGGCCTTCTGGTTCTTCCATCAAGATGGATAATGGTCTCAGCAGCCAGGACCCTCCAAAGCTGATGGGACAGTCTGAGACGATGCCTGCATATGATATGGTGCAAAAATGTTTACCGTCAGGTGATGGTGGGGTAGGAAGTTTAAAATGTCCTTCAGGACTGGAGCCTTCAAATGGACTTATGTTAAGGGATAGACTTCCACCCCAAATAGTTGCTGCAGAGGCTACAATAAGAAGGATCGGCTTAAATAACATTGACTTGAATAATGCTTATGATGACATAGCGGATGATGCTGAGAACCTTAGTAAGTCTCATCCTCCTGTGGGTTCAGGCTTTGGGTCTCTTGATCGTCCTTCATGGTTACAACTTGACTCTCAAAAGTCAAGTCCTCAACAGACAAGTAGAAACTCAGATTCAACCTCTACCCAGTCACCTTCTAGTTCTAGCGGAGAGGCTCCGAGTCGCACAGATCGAATTGTTTTCAAACTCTTTGGCAAAGATCCAAATGATTTTCCTCTTGTTCTCCGATCGCAGATTCTCAACTGGTTATCCCACAGTCCCACAGAGATCGAGAGCTATATAAGGCCAGGCTGTATCATATTGACAATATATCTGTGTCTAGAAAAATCTGCATGGGAGGAGCTCTGCGGTAATCTAGGACCCAACTTGAAGAAGCTTCTTGCCGAATCAAATGATTCTTTCTGGAGGACAGGATGGGTATATACAAGGGTGCGGCACTCTGTAGCTTTTCTGTACAATGGTCAGGTTGTTTTAGATGTTCCCATGAGCCTTAGAAGCCCACAACATTGTAGAATTTCTTGTATTAAACCACTTGCTGTTTCCACAAAGGCAAGCATTCAATTTGTTGTTAAAGGTTTCAACCTTTTCCGTTCTAACACAAGGTTACTCTGTGCACTTGAAGGGAAGTATCTGGCACAGTACAGTTATTGTGACTTGATTGATGGTGCTGATACAGCTATTGAACATGATGAGCTTCAACACCTAAGCTTCTCTTGTCATATACCGAGTATAGCTGGGAGGGGATTTATTGAGGTGGAAGATCATGGTCTCAGCAGCTGTTCCTTTCCTTTTATAGTTGCAGAGCCAGAAATTTGTTCAGAGATCTGTAATCTGGAGAGTGTGATTGAAGCAGCTGAAGTCTGTAAAGATGTACAGATTAGAAGCAAACAATTGGAAGAAAAGACTCGAGCTTTGGATTTCATACAAGAAATGGGTTGGCTCCTTCATAGAAGTCAAATGAAAGTTAGGTTGGGTCCCATGGCACCTGTCCAGGATCACTTCCATTTCAATCGGTTCACATGGCTTGTTGACTTCTGCATGGACCACAATTGGTGTGCCGTCATGAAAAAGCTTTTGGACATTATGTTTGAGGGTACTGTTGATGCAGGAGAACATACCTCCATTGAGCTTGCATTGTTAGACTTGGGTCTTCTACAGAGAGCTGTGAGGAGAAATTGCAGGCCTATGGTGGAACTACTTTTGAATTTTGTGCCAGTTCGAACTTCTGATGCCTCAGACAGTAAGGAGAAGCAAGTTGGCAAACACACTGACAGATTCTTATTTAAACCTGATATTGTTGGGCCTGCTGGGTTGACTCCCCTTCATGTTGCAGCAAGCATGAATGGCTCAGAGAATGTATTAGATGCGTTAACCGATGATCCTGGAATGGTAGGAATCAAGGCATGGAAAGATGCCAGGGACAGCACAGGTTTGACGCCACATGACTACGCATCCATGAGGGGCTACCATTCCTACATTGAACTTGTCCAGAGGAAAACGAGCAAGAAAAGTGAAACTCATCATCATGTCCTTGATATCCCCTCTACAATTGTAGATAGTAACACAAAGAAGAAGCATAGGTCATCATCAAAAGTTTCAAGCTTGAAGATCGACCCGGCAGCAACTATTCCACATCACTGCAGGCTATGCCAGCGCAAGCTGGCTTATAACACCACGAGAACAGCACTGGTTTATAGGCCAGCAATGCTCTCAATGGTAGCCATTGCAGCTGTGTGTGTATGTGTGGCTTTGCTTTTCAAAAGCTCACCCAGGGTCTCCTATGTCTTCCAGCCCTTCAGATGGGAATCATTGGATTATGGCTCAATTTAG 3090 0.4414 MEAKFRGKNQYVYGPVVPEMKAVGKRSLEWNLEDWKWDGDLFTATPLNSVPSDCRNRQSFPVDPEIPAKAHTSNSLSSNWDDVNPEKGKRELEKRRRAVVAEGDELNDEGGCLNLNLGGQIYPIMEGDEKSGKKTKIVGNGTTSNRAVCQVEDCRADLSNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDAVVNGSSLNDERGSSYLLTSLLRILSNMHSNGSDLNRDQDILSHLLRNLASLAGTINGRNMASLLEGSQGFVNVGTSETAQKVPNLNSNGAEPFRPSGSSIKMDNGLSSQDPPKLMGQSETMPAYDMVQKCLPSGDGGVGSLKCPSGLEPSNGLMLRDRLPPQIVAAEATIRRIGLNNIDLNNAYDDIADDAENLSKSHPPVGSGFGSLDRPSWLQLDSQKSSPQQTSRNSDSTSTQSPSSSSGEAPSRTDRIVFKLFGKDPNDFPLVLRSQILNWLSHSPTEIESYIRPGCIILTIYLCLEKSAWEELCGNLGPNLKKLLAESNDSFWRTGWVYTRVRHSVAFLYNGQVVLDVPMSLRSPQHCRISCIKPLAVSTKASIQFVVKGFNLFRSNTRLLCALEGKYLAQYSYCDLIDGADTAIEHDELQHLSFSCHIPSIAGRGFIEVEDHGLSSCSFPFIVAEPEICSEICNLESVIEAAEVCKDVQIRSKQLEEKTRALDFIQEMGWLLHRSQMKVRLGPMAPVQDHFHFNRFTWLVDFCMDHNWCAVMKKLLDIMFEGTVDAGEHTSIELALLDLGLLQRAVRRNCRPMVELLLNFVPVRTSDASDSKEKQVGKHTDRFLFKPDIVGPAGLTPLHVAASMNGSENVLDALTDDPGMVGIKAWKDARDSTGLTPHDYASMRGYHSYIELVQRKTSKKSETHHHVLDIPSTIVDSNTKKKHRSSSKVSSLKIDPAATIPHHCRLCQRKLAYNTTRTALVYRPAMLSMVAIAAVCVCVALLFKSSPRVSYVFQPFRWESLDYGSI 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2496 1029 Coils Coil 89 109 - -
Dere03g2496 1029 Gene3D - 796 933 IPR036770 -
Dere03g2496 1029 Gene3D - 140 210 IPR036893 GO:0003677|GO:0005634
Dere03g2496 1029 SUPERFAMILY SBT domain 147 228 IPR036893 GO:0003677|GO:0005634
Dere03g2496 1029 ProSiteProfiles Zinc finger SBP-type profile. 146 223 IPR004333 GO:0003677
Dere03g2496 1029 FunFam Squamosa promoter-binding-like protein 14 140 210 - -
Dere03g2496 1029 SUPERFAMILY Ankyrin repeat 797 915 IPR036770 -
Dere03g2496 1029 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 89 915 IPR044817 GO:0003677
Dere03g2496 1029 MobiDBLite consensus disorder prediction 55 91 - -
Dere03g2496 1029 MobiDBLite consensus disorder prediction 439 474 - -
Dere03g2496 1029 Pfam SBP domain 149 222 IPR004333 GO:0003677
Dere03g2496 1029 MobiDBLite consensus disorder prediction 435 474 - -
Dere03g2496 1029 MobiDBLite consensus disorder prediction 215 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2496 Dere-ChrDere03 39126420 39133129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2496 173 303 SBP-box Gene Family AT2G47070 60.448 2.01e-41 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere03g2496 SBP 7.9e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g2496 03 39126420 39133129 Dere03g2496 03 39126420 39133129 ECH