Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2480 ATGAAGCATGGCAAGGTTATTGCAGGAGGAGTCTCCATCATTGTTGTAGTAGGGGCAGTGATTGGCCTCATAGCTGGTGTCACACGTACTGGCTCTAATGAAACCAAGAATGGGGGAGTCTCCACAACCTCCAAGGCCGTCACAGCTTTATGCAGCCCCACAGATTACAAGGAACAATGTGTTGAAAGCCTCAGCGCTGTGGCTCAGAATGGCAGTGCCACCCCAAATGACTATATCCAAGCTGCAATTAGTTACACCCTCAAACAGGTTGAGGCAGCTATGAACAAATCAGGTGGTCTAGCCAAGAACGCCAAGGATGAGAGGCAGAAGATGGCGGTGGACGATTGCAAGGACTTGCTGGAATCTGCCATTGATGAGCTCCAAGCTTCCTTTACAATGGTGGGTGATGCTCAGCTTCATACCCTGCAACAAAGAGAAGCAGAGCTTCAAGATTGGCTTAGTGCTGTGATTTCTTACCAGCAGTCATGCCTTGACGGGATGGAACAACCTGACCTGAAAGTGGAAATGTCCAATGGGCTTCTCAATGCCTCCCAGCTAACCAGCAATGCCTTAGCCATTGTTTCTGCCATTTCTGAGATCTACGGCTCCTTCAACATCCCAACAAACTCAAATTCAAGTTCAAGTCCGAGTTCAGGCTCAAGCTCTCGAAGGCTGCTTGAAACAGATAAGGGTATAGTTGAAACAGAAAAGGGAGAAGCTGAAACAGAGAATGGAAAATACCCTCCTTGGTTAACAGCTGCTGATAGAAAGCTATTGCAGGCCCCAAACAGTGCGAAGCCTAATGCAATAGTAGCACAAGATGGGAGTGGACAATACAAAACTATTGGCGAGGCTCTTGCTGCTTATCCTAAGAATCAACAAGGAAGATTTGTCATATATGTGAAGGCTGGGGTGTACGATGAGTATGTTACAGTCACAAAGAAACAAGTTGATGTGTTTATGTATGGAGATGGACCTGAGAAGACGATAGTTACCGGAAGCAAAAGCTTCACTGGTGGCGTCTCCACCTTCAAGACTGCACCCTTTGGTCTCCATAATACCAATCTGTATGAGAAACAGTCTAACCTGGCTAAGCCATTTCAGTCCAAAAGATTAGGTTCTACTAGGACGAAGGTGTGGAATTTTGATGGCCACCTCACCTAG 1164 0.4665 MKHGKVIAGGVSIIVVVGAVIGLIAGVTRTGSNETKNGGVSTTSKAVTALCSPTDYKEQCVESLSAVAQNGSATPNDYIQAAISYTLKQVEAAMNKSGGLAKNAKDERQKMAVDDCKDLLESAIDELQASFTMVGDAQLHTLQQREAELQDWLSAVISYQQSCLDGMEQPDLKVEMSNGLLNASQLTSNALAIVSAISEIYGSFNIPTNSNSSSSPSSGSSSRRLLETDKGIVETEKGEAETENGKYPPWLTAADRKLLQAPNSAKPNAIVAQDGSGQYKTIGEALAAYPKNQQGRFVIYVKAGVYDEYVTVTKKQVDVFMYGDGPEKTIVTGSKSFTGGVSTFKTAPFGLHNTNLYEKQSNLAKPFQSKRLGSTRTKVWNFDGHLT 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2480 387 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 197 IPR035513 -
Dere03g2480 387 FunFam Pectinesterase 43 198 - -
Dere03g2480 387 Pfam Plant invertase/pectin methylesterase inhibitor 46 193 IPR006501 GO:0004857
Dere03g2480 387 NCBIfam pectinesterase inhibitor domain 40 195 IPR006501 GO:0004857
Dere03g2480 387 CDD PMEI-like_3 49 198 - -
Dere03g2480 387 Gene3D Invertase/pectin methylesterase inhibitor family protein 43 198 IPR035513 -
Dere03g2480 387 PANTHER PECTINESTERASE 19 354 - -
Dere03g2480 387 SMART PMEI_2 42 193 IPR006501 GO:0004857
Dere03g2480 387 SUPERFAMILY Pectin lyase-like 265 357 IPR011050 -
Dere03g2480 387 Gene3D - 262 372 IPR012334 -
Dere03g2480 387 Pfam Pectinesterase 268 356 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2480 Dere-ChrDere03 38854197 38856795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2480 5 347 Carbohydrate Esterase AT3G05610 36.571 1.85e-67 224