Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2476 ATGCTCTGCTTTCAATTTATCAGCGTTTGTGGAGGTGTTTGTAAGCAGTTGAAGTCTTCCTCTGGGAAAATGACAAGGGAGACAAGTTTAGATGGAGATATCAACACCATATCTGAGACAGCAAATTCAGCACGTAATCCAATAAGTGCACGTCCTGAAAAAGTTCAACAAGAGACAGACGAGCATCAGGGTTCAAAGAAGAGCAAGGAAAAAGATGAAACCACCAACACTATACCGTTTTACAAGCTTTTCTCATTTGCAGATTCTATGGATCATCTGTTGATGCTTGTGGGTACAGTGGGTGCTGTAGCAAATGGAATAGCTATGCCCTTAATGACTATATTTTTTGGAAATGTAATTGATGCATTTGGAACATCCGCAAACACTAACGAAGTTGTCCATGAAGTTTCCAAGGTGTCTCTGAAGTTTGTATACTTGGCTGTGGGTTCCTTTGTTGCATCATTTCTTCAGGTGACTTGCTGGATGGTCACTGGCGAGAGACAGGCTGCAAGAATAAGAGGTTTATACCTTAAGACAATTTTGAGGCAGGATATCAGTTTCTTTGATACGAAAACTAACACTGGCGAGGTTGTTGAGAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGAGAGAAGGTAGGACAGTTCATACAGTTAGTGGCAACTTTTTTAGGAGGTTTTGTCATAGCATTCATTGAGGGATGGCTTCTAACCGCTGTCATGCTATCTTCTATTCCTCCTGTTGTCCTTGCTGGTGCTATAATGAGCATTGTTATTGCCAAAGTGACATCCCGCGGACAGGCGGCTTATTCTGCTGCAGCAACTGTAGTAACGCAGACAATTGGTTCTATCCGAACTGTTGCATCATTCACAGGGGAGAAGCAAGCTATAGCTAAATATGATCAGTCCTTGATTCATGCATACAGGAGTAGTGTGCAAGAGGGACTGGCTTCTGGTTTGGGTTTTGGTATAGTTTATCTCATTTGTTTCTGCACTTATGGTTTGGCCATATGGTATGGTGGGAAAATGGTACTAGAGAAAGGATATACAGGAGGAAAGGTTATGACTGTAATTTTCGCCGTATTGACAGGCTCCTTGTCTCTAGGACAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCAGGACAAGCTGCAGCCTCTAAGATGTTTGAAACAATAAAAAGGAAGCCGGACATTGATGTTTATGACACTACTGGTCAGCAGCTAGATGATATACGTGGGGATATAGAACTGAGAGAAGTTTGCTTTAGTTATCCTGCAAGACCAAACGAACAGATATTCAGTGACTTTTCTCTCTCAATACCAAGTGGCACTACAACAGCTTTGGTTGGACAAAGTGGGAGTGGAAAATCAACAGTTATTAGTCTGTTAGAAAGATTTTATGATCCACAAGCTGGTGAAGTTCTCATAGATGGTATCAATATCAAAGAGTTTCAACTAAGATGGGTTAGACAGAAAATAGGTCTTGTCAGCCAGGAGCCAGTTCTCTTTACTTGTAGCATCAAAGAGAACATTACCTATGGTAAGGATGGTGCAACAGAAGAAGAAATCAGAGCTGCAGCAGACCTTGCTAATGCTGCTAAATTCATAGATAAACTTCCTCAGGGGTTAGACACAATGGTTGGTGAACATGGAACTCAGCTCTCTGGTGGTCAAAAGCAGAGGGTAGCCATAGCAAGAGCTATATTGAAAGACCCAAGAATTCTTCTTCTTGATGAAGCTACAAGTGCCCTTGATGCTGAATCCGAGAGAATAGTACAGGAGGCGCTGGACAGAATAATGATAAACAGAACCACTGTCATTGTAGCCCATCGCTTGAGTACTGTAAGGAAAGCTGATACTATTGCCGTTATTCAGCAAGGAAAAATAGTAGAAAAAGGTTCTCATGCTGAGCTGACTAAGGATCCTGATGGAGCCTATAGCCAGCTCATTAGATTGCAAGAACTAAAGAAGGAGTCAGAGATTGTTAGCGTAAATGACGGTGACAAGCCTGAAAGCATTATGAATTCTGAAAGCCAATCAAGTCAACGATTTTCTTTCTTAAAATCTGTAAGTCGGGAGTCATCTGGAGTTGGAAGCAGCAGCCGTCACTCATTCTCCGTGCCATATGGTGTGCCTCCAACAGTCGGCCTCTTTGAAAAAGCTGGTGCAGGACCTGAAGCTTCTCCTTCAGCAGCTTCACCAAGACCTCCAGAAGTGCCACTTCACCGCCTGGCTTATCTAAACAAGCCTGAGATCCCAGTGTTACTTATAGGAACTCTAGCTGCAGTGGCAAATGGGGCAATATTACCCATTTTTGGGTTAATGCTCTCCAAAATGGTAAACACTTTCTACGAGCCTGCAGATAAACTCCGGAAAGATTCAAGGTTTTGGGCATTGATGTTTGTTGCCCTTGGTGTGGCATCCCTCTTAATATTTCCATCAAGGTTATACTTTTTTGCTGTGGCTGGTGGTAAGTTGATAAAAAGGATCAGGCTATTGTGTTTTGAGAAAATAACTCATATGGAAGTAAGTTGGTTTGACGAAGCTGAGCATTCAAGCGGAGCCCTTGGAGCCAGACTATCTGCTGATGCAGCTTCTGTTCGAGCTTTGCTTGGGGATGCACTCAGTTTGCTGGTTCAAAATATTGCTGCTGCAATTATTGGCTTGGTAATTGCTTTTGAAGCATGCTGGCAGCTTGCTCTTATAATTCTGGTTATGTTACCCCTATTAGTGCTAAATGGATACACACAATTCAAATTCATAGAAGGATTCAGCGCAGATGCTAAGAAATTGTATGAGGAAGCAAGTCAAGTGGCAAATGATGCAGTAGGGAGTATTAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTGATGGAATTATACCATAAAAAATGTGAAGGGCCTATTAAGACAGGCATAAGGAGAGGCATAATAAGCGGAACAGGATTTGGGTTATCATTCTTCTTGCTGTTTGCAGTCTATGCATGCAGTTTTTATGCTGGAGCTCGACTTGTAGAGGATGGGAAAACATCATTCTCAGATGTTTTCCGTGTCTTCTTTGCTCTCACTATGGCAGCTGTAGGAATCTCGCAATCTAGCTCCTTGGCTCCTGATTCAAGTAAAGCAAAAAGTTCTGTTGCTTCTATATATGCTATTCTCGATCGGGAATCAAAAATAGACCCCAGTGATGACTCTGGAATGACATTGGAAGACTTAAAGGGGGAAATTGCGTTCCACCATGTTAGTTTCAAGTATCCAACCAGACCTGATGTTCAAATATTCAGAGATCTTTCCTTGAGCATCCGTTCAGGAAAGACTGTGGCTCTGGTTGGAGAAAGTGGGAGTGGGAAATCAACTGTTATCTCATTGTTACAGAGATTTTATGACCCTGATTCCGGTCACATTACACTGGATGGAATAGAAATCCAAAAGCTACAGGTTAAATGGTTAAGGCAGCAAATGGGCCTGGTAAGCCAAGAGCCTGTGTTATTCAATGACACAATCCGAGCCAATATTGCATATGGAAAGGGAGGAGATGCATCAGAGGCAGAAATTATTGCAGCAGCAGAACTGGCAAATGCTCACAAGTTCATTAGTAGTTTGCAGCAGGGGTATGACACATTAGTAGGAGAGCGAGGAGTTCAATTATCTGGGGGACAGAAGCAGCGTGTGGCTATTGCAAGAGCCATAGTGAAGAATCCAAAAATATTACTACTAGATGAAGCCACCAGTGCTTTAGATGCTGAGTCTGAGAAAGTGGTTCAGGATGCACTGGATCAAGTTATGGTGGAAAGAACCACAGTAGTGGTGGCTCATAGGTTATCCACTGTTAAGGGTGCAGATTTAATTGCAGTGGTTAAAAATGGAGTTATAGCTGAGAAAGGAAAGCATGAAAGTTTGATCAACAAGGGTGGTGCTTATGCTTCTTTAGTAGCATTACACACAAGTGCTTCTTCATCCTAG 3975 0.4247 MLCFQFISVCGGVCKQLKSSSGKMTRETSLDGDINTISETANSARNPISARPEKVQQETDEHQGSKKSKEKDETTNTIPFYKLFSFADSMDHLLMLVGTVGAVANGIAMPLMTIFFGNVIDAFGTSANTNEVVHEVSKVSLKFVYLAVGSFVASFLQVTCWMVTGERQAARIRGLYLKTILRQDISFFDTKTNTGEVVERMSGDTVLIQDAMGEKVGQFIQLVATFLGGFVIAFIEGWLLTAVMLSSIPPVVLAGAIMSIVIAKVTSRGQAAYSAAATVVTQTIGSIRTVASFTGEKQAIAKYDQSLIHAYRSSVQEGLASGLGFGIVYLICFCTYGLAIWYGGKMVLEKGYTGGKVMTVIFAVLTGSLSLGQASPSLSAFAAGQAAASKMFETIKRKPDIDVYDTTGQQLDDIRGDIELREVCFSYPARPNEQIFSDFSLSIPSGTTTALVGQSGSGKSTVISLLERFYDPQAGEVLIDGINIKEFQLRWVRQKIGLVSQEPVLFTCSIKENITYGKDGATEEEIRAAADLANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTVRKADTIAVIQQGKIVEKGSHAELTKDPDGAYSQLIRLQELKKESEIVSVNDGDKPESIMNSESQSSQRFSFLKSVSRESSGVGSSSRHSFSVPYGVPPTVGLFEKAGAGPEASPSAASPRPPEVPLHRLAYLNKPEIPVLLIGTLAAVANGAILPIFGLMLSKMVNTFYEPADKLRKDSRFWALMFVALGVASLLIFPSRLYFFAVAGGKLIKRIRLLCFEKITHMEVSWFDEAEHSSGALGARLSADAASVRALLGDALSLLVQNIAAAIIGLVIAFEACWQLALIILVMLPLLVLNGYTQFKFIEGFSADAKKLYEEASQVANDAVGSIRTVASFCAEEKVMELYHKKCEGPIKTGIRRGIISGTGFGLSFFLLFAVYACSFYAGARLVEDGKTSFSDVFRVFFALTMAAVGISQSSSLAPDSSKAKSSVASIYAILDRESKIDPSDDSGMTLEDLKGEIAFHHVSFKYPTRPDVQIFRDLSLSIRSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGIEIQKLQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDASEAEIIAAAELANAHKFISSLQQGYDTLVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDQVMVERTTVVVAHRLSTVKGADLIAVVKNGVIAEKGKHESLINKGGAYASLVALHTSASSS 1324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2476 1324 FunFam ABC transporter B family member 9 1047 1069 - -
Dere03g2476 1324 Pfam ABC transporter transmembrane region 758 1030 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere03g2476 1324 Pfam ABC transporter transmembrane region 95 369 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere03g2476 1324 MobiDBLite consensus disorder prediction 25 73 - -
Dere03g2476 1324 FunFam ABC transporter B family member 1 1070 1319 - -
Dere03g2476 1324 FunFam ABC transporter B family member 1 408 657 - -
Dere03g2476 1324 SUPERFAMILY ABC transporter transmembrane region 743 1065 IPR036640 GO:0005524|GO:0016020
Dere03g2476 1324 Gene3D - 1070 1323 IPR027417 -
Dere03g2476 1324 FunFam ABC transporter B family member 9 82 414 - -
Dere03g2476 1324 MobiDBLite consensus disorder prediction 54 73 - -
Dere03g2476 1324 MobiDBLite consensus disorder prediction 25 53 - -
Dere03g2476 1324 Pfam ABC transporter 437 585 IPR003439 GO:0005524
Dere03g2476 1324 Gene3D - 416 682 IPR027417 -
Dere03g2476 1324 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 96 383 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere03g2476 1324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1069 1317 IPR027417 -
Dere03g2476 1324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 656 IPR027417 -
Dere03g2476 1324 CDD ABC_MTABC3_MDL1_MDL2 1080 1315 - -
Dere03g2476 1324 SMART AAA_5 445 631 IPR003593 GO:0016887
Dere03g2476 1324 SMART AAA_5 1107 1300 IPR003593 GO:0016887
Dere03g2476 1324 CDD ABC_6TM_Pgp_ABCB1_D2_like 748 1063 - -
Dere03g2476 1324 CDD ABC_MTABC3_MDL1_MDL2 418 656 - -
Dere03g2476 1324 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 759 1045 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere03g2476 1324 FunFam ABC transporter B family member 1 738 1046 - -
Dere03g2476 1324 ProSitePatterns ABC transporters family signature. 1220 1234 IPR017871 GO:0005524|GO:0016887
Dere03g2476 1324 CDD ABC_6TM_Pgp_ABCB1_D1_like 95 379 - -
Dere03g2476 1324 ProSitePatterns ABC transporters family signature. 557 571 IPR017871 GO:0005524|GO:0016887
Dere03g2476 1324 Pfam ABC transporter 1099 1248 IPR003439 GO:0005524
Dere03g2476 1324 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1080 1317 IPR003439 GO:0005524
Dere03g2476 1324 SUPERFAMILY ABC transporter transmembrane region 82 400 IPR036640 GO:0005524|GO:0016020
Dere03g2476 1324 Gene3D ABC transporter type 1, transmembrane domain 141 1053 IPR036640 GO:0005524|GO:0016020
Dere03g2476 1324 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 418 654 IPR003439 GO:0005524
Dere03g2476 1324 PANTHER ABC TRANSPORTER B FAMILY 54 660 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2476 Dere-ChrDere03 38798458 38806145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2476 71 670 Calmodulin-binding Proteins AT2G36910 37.500 1.48e-113 385