Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2473 ATGGAACTGGACGACTGGGACTTGAGCGCAGAGGATCTTGATTCTCTTGAAAAAGACGCTTTCCAGAAGATTGCTCAACTACGCAATGCTTCTTCCTCTGTAACTGTTTCTTCTTCTACTGCCTCTAGTAGTGGACAATTACATCATCAGCATACCGCAAAACCTTGTGGCAGCGACTTGGAACGATCCCCTGCAAAACCCATCTCTGATTCTCGTCCTGAAAGAGTTGAAGCTTTGTCTCCACGGGCTAGAGTGTTACCCTCTTCATTAAGATCAGGAACAAACGACGATGATCATTTGAAAGAAATGCCAAAGGTTTCTGTTAAACTTTTTCTTCATTCCAGCGGAGACATTGCAGCAAAATTTCCATATGACCAGGTAGTAATAGCTGCTATCAGGAGAGTCCCTAAGTCTACTTGGAATGCAAAAGAAAGGTTATGGATGTTCCCACTATCTTCTTTGTCAGCAGCAGAAAAGGTTCTTGTTGAACTATCTGGTAATAATGTTCAGATTGATAACCTAGAGCCCCTATTGCATCGGGCCATTGCTGCTGCTTCTGCTATTCCTGATCTTCGAGATCGATATGACAGGATCCCCAGCTACATTGAATCAAAACTTTTGCCATTTCAGCGAGAAGGGGTTAGGTTTATATTGCAGCATGGAGGGCGTGCTCTTTTGGCTGATGAAATGGGACTGGGAAAGACTTTGCAGGCCATTGCTGTAGCTTCATGCATTTCTGACTCATGGCCTGTACTCATACTTGCACCATCTTCGTTACGTTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTCCATCAGATATACTTGTTGTGCTATCCCAAAGTGGTGGATCAAATAGAGGAGGTTTCGCAATAGTATCTTCAAATACTAAAGGCAGTATTCATCTAGATGGATTGTTCAACGTCATCTCATATGATTTAGTTCCAAAGCTACAGACTATGCTTATGGCATCTGAATTCAAGGTTGTGATTGCAGATGAGTCGCACTTTCTTAAAAATGCTCAAGCAAAGAGAACTACTGCTTCTCTTCCAGTTATAAAGAAAGCTCAATATGCAATATTGCTTAGTGGAACTCCTGCTTTGTCCCGGCCAATTGAACTATTCAAGCAGCTGGAAGCATTGTATCCTGATGTTTATAAAAATGTCCATGAATATGGTAACCGATATTGCAAGGGTGGAATATTTGGAGTTTACCAAGGTGCAAGTAACCATGAAGAATTGCACAATTTGATGAAGGCAACAGTGATGATTCGCAGGCTTAAAAAGGATGTTCTTTCTCAACTTCCGGTAAAGCGTAGGCAGCAGGTCTTCCTAGATTTGGCTGACAAGGACATGAAGCAAATAAATGCTCTATTACGAGAGTTGGAGGTGATTAAAGCTAAAATTAAGGCATCTAAATCAAAAGATGAGGCTGAATCACTCAAGTTTACTCAAAAGAATCTTATTAATAAGATATATACCGAATCTGCAGAAGCCAAGATCCCAGCAGTTCTTGATTATGTTGGAACTGTTATTGAGGCAGGTTGTAAGTTTCTTATATTTGCACACCATCAGCCAATGATAGATTCGATACATGATTTTCTTATTAAAAAGAAAGTAGGTTGCATCCGCATTGATGGTAGTACACCCCCTGCGTCTCGGCAAGCATTGGTTACAGATTTTCAGGAAAAAGATTCTATCAAGGCAGCAGTGCTGTCTATCAAAGCTGGAGGAGTTGGGTTAACTTTAACTGCTGCAAGTACTGTCATTTTTGCAGAATTATCCTGGACCCCAGGAGATCTAATTCAAGCAGAAGACCGTGCTCATAGAATTGGCCAGGTATCTTCAGTAAATGTATACTACTTGCTAGCGAATGACACAGTTGATGACATCATATGGGATGTAGTGCAGAGCAAATTGGAAAATTTAGGACAGATGTTAGATGGCCATGAGAACACCTTGGAAGTCTCAGCTTGTCAGCCAGGGAATAGCCCTGCTAAGCAGAAAACTCTTGACTCCTTTGTGAGAAGATGTAATAACATGGATGAGCCAGAACAGCAGTCCAACCTTAAACGGCCGCGACACTGA 2097 0.4158 MELDDWDLSAEDLDSLEKDAFQKIAQLRNASSSVTVSSSTASSSGQLHHQHTAKPCGSDLERSPAKPISDSRPERVEALSPRARVLPSSLRSGTNDDDHLKEMPKVSVKLFLHSSGDIAAKFPYDQVVIAAIRRVPKSTWNAKERLWMFPLSSLSAAEKVLVELSGNNVQIDNLEPLLHRAIAAASAIPDLRDRYDRIPSYIESKLLPFQREGVRFILQHGGRALLADEMGLGKTLQAIAVASCISDSWPVLILAPSSLRLQWASMIQQWLNIPPSDILVVLSQSGGSNRGGFAIVSSNTKGSIHLDGLFNVISYDLVPKLQTMLMASEFKVVIADESHFLKNAQAKRTTASLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGIFGVYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLADKDMKQINALLRELEVIKAKIKASKSKDEAESLKFTQKNLINKIYTESAEAKIPAVLDYVGTVIEAGCKFLIFAHHQPMIDSIHDFLIKKKVGCIRIDGSTPPASRQALVTDFQEKDSIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENTLEVSACQPGNSPAKQKTLDSFVRRCNNMDEPEQQSNLKRPRH 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2473 698 Gene3D - 184 435 IPR038718 -
Dere03g2473 698 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 690 - -
Dere03g2473 698 FunFam Chromatin remodeling factor18 464 694 - -
Dere03g2473 698 Pfam SNF2-related domain 224 486 IPR000330 GO:0005524|GO:0140658
Dere03g2473 698 FunFam Chromatin remodeling factor18 179 453 - -
Dere03g2473 698 MobiDBLite consensus disorder prediction 65 79 - -
Dere03g2473 698 Coils Coil 458 478 - -
Dere03g2473 698 MobiDBLite consensus disorder prediction 30 51 - -
Dere03g2473 698 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 658 IPR027417 -
Dere03g2473 698 SMART helicmild6 532 615 IPR001650 -
Dere03g2473 698 CDD DEXHc_HARP_SMARCAL1 206 429 - -
Dere03g2473 698 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 215 387 IPR014001 -
Dere03g2473 698 Gene3D - 468 695 IPR027417 -
Dere03g2473 698 SMART ultradead3 202 395 IPR014001 -
Dere03g2473 698 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 429 IPR027417 -
Dere03g2473 698 CDD SF2_C_SNF 502 626 - -
Dere03g2473 698 MobiDBLite consensus disorder prediction 30 99 - -
Dere03g2473 698 ProSiteProfiles HARP domain profile. 102 176 IPR010003 -
Dere03g2473 698 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 507 658 IPR001650 -
Dere03g2473 698 Pfam Helicase conserved C-terminal domain 514 615 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2473 Dere-ChrDere03 38754826 38771617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2473 467 646 RAD5 or RAD16-like Gene Family AT1G02670 31.522 1.61e-17 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere03g2473 SNF2_N 5.5e-28 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g2473 03 38754826 38771617 Dere03g2473 03 38754826 38771617 ECH