Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2456 ATGATGCTGACGGAATCGCAGCGTCAAAAAGCTTTGAAATACCCAAGACTTGCAAATCCAGCTTCGTTGGTGTGGAAATCTTCCAGAGCATTCGGATCGATCTGTTCGATTGTCTTCCAGATGGAGGGAATACTTGACTCTGATGATGGCGTGAAGCCCGAGACTGAACAAGGAGCCGGGGGAGAAAAAGGCCAAGACTTGGTTTCAGAATCTTCTCCTCTCACCGTGAATTCTGGCAAAAATGTTGATGGCGTTGCTACCGACGGAGAGGCTGTTGAAGAATCTGCTGGGGATTTATTGGGACAGAAGCATCTCTCCGCAAACTGTTCAATGCTAGCATCTGGACTGAATACAAGTCAGCTTACTATCTTCTTTAATGGGAGTGTTTGTGTCTATGATGGAATTCCTGCAGAAAAGGTGCATGAAATAATGCTTGTTGCTGCTTCTGCTGCTCAGTCTGCTGACATGAAGAAGAATGGGATACAATCCCCCTTTACTTCACCCATTCCCACAAGGCCACCTTCTCCACAGGGAACCCCTAATAATTTGGCTTCACAAAAACCAATCTGCTTTCCCGCACAGAAGAGTTCCATTTGTGGGTTGCAAGAATTTCCAATTGCACGCAGACAGTCACTGCAGCGCTTTCTTGAGAAGCGGCGAGATAGGTTGGGAAGCAGAGCCCCATATCCTTCACCATCAACAACTAAAGTGGCTGACAATATAGAGAACAGCTTCAGCGCTGATAATGCACCAGATCTGGTTTCCTTCAAACAGTCAGAGGAGGAATTTCAACCTAGTATCACTGCCTCCTGA 813 0.4662 MMLTESQRQKALKYPRLANPASLVWKSSRAFGSICSIVFQMEGILDSDDGVKPETEQGAGGEKGQDLVSESSPLTVNSGKNVDGVATDGEAVEESAGDLLGQKHLSANCSMLASGLNTSQLTIFFNGSVCVYDGIPAEKVHEIMLVAASAAQSADMKKNGIQSPFTSPIPTRPPSPQGTPNNLASQKPICFPAQKSSICGLQEFPIARRQSLQRFLEKRRDRLGSRAPYPSPSTTKVADNIENSFSADNAPDLVSFKQSEEEFQPSITAS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2456 270 ProSiteProfiles Tify domain profile. 114 149 IPR010399 -
Dere03g2456 270 SMART tify_2 114 149 IPR010399 -
Dere03g2456 270 MobiDBLite consensus disorder prediction 160 186 - -
Dere03g2456 270 Pfam tify domain 118 148 IPR010399 -
Dere03g2456 270 Pfam Jas motif 205 229 IPR018467 -
Dere03g2456 270 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 87 239 IPR040390 -
Dere03g2456 270 MobiDBLite consensus disorder prediction 48 84 - -
Dere03g2456 270 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2456 Dere-ChrDere03 38617642 38621154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2456 119 231 Tify Gene Family AT5G20900 51.754 2.00e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Dere03g2456 tify 5.2e-16 No_clan