Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere03g2455 | ATGTCAGCGGAACCTCCTCCTTTTCAAGAATCAGCGCGATGTGATGTCTGCAATTGCAGTTTCAACACTTTCAGGAGACGGCATCACTGTCGATGCTGTGGGAGAACATTGTGCTATGAACATTCATCAAATCAAATGGCTTTACCACAGTTTGGCATTTACTCGAATGTCAGAGTATGTTCTGATTGTTTCAACAATTCAGGATCTAGAAAGCATGATCCACAGGTTTCTTCAGATGGAGCAAATAGCATAACAAATGCAATTTCCAAACTAGACATTGATGTGGATGTACCAACAGCAGAGAGTAAGTATGTATCAGGCATTAAAGAGTGTAAGTGTGGAATGCCTCTCTGCATTTGTGAAGCTCCAGTCCCTTCCTCTGATGCAATGCCCCAGCAGTGCGAGAAGGAATCCACTCCAGTCATAACACCTCCGTCAAATCCTAAACCAAAGAAGTCAGATGTTGTCCCTAAAAGTAGAAGCTCCACATCAAACAGCAAGTTTAGTTCTTTCAATCTTGGTCATGTAACCAGTGGTGCCTCAGACAGACCCCAGATGGAGTATGAAGCTAATGGAGAGGGTTTGAGAGAAGCAATAAAAAATGGTGACGTTGCTGCTGTCAAGAAACTTCTGAATGAGGGTGTAAATGCAAATTACAGGGACAAGCAAGGACTGTCTTTATTGCATTTGGCTGCTGTCTTCAATCAGACCGATATAGTTTTCATTCTCATGGATGCTGGGGCAAGCTTACTGTACAAGAATGCACAAGGAGAAACGCCCTTGGATTGTGCACCAGCTACCCTGCAATACAAAATGAGAAAGAAGATGGAAGATGACAAGCCAGTGGATCAAAGCACATGA | 861 | 0.4321 | MSAEPPPFQESARCDVCNCSFNTFRRRHHCRCCGRTLCYEHSSNQMALPQFGIYSNVRVCSDCFNNSGSRKHDPQVSSDGANSITNAISKLDIDVDVPTAESKYVSGIKECKCGMPLCICEAPVPSSDAMPQQCEKESTPVITPPSNPKPKKSDVVPKSRSSTSNSKFSSFNLGHVTSGASDRPQMEYEANGEGLREAIKNGDVAAVKKLLNEGVNANYRDKQGLSLLHLAAVFNQTDIVFILMDAGASLLYKNAQGETPLDCAPATLQYKMRKKMEDDKPVDQST | 286 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere03g2455 | 286 | Pfam | Ankyrin repeats (3 copies) | 197 | 264 | IPR002110 | GO:0005515 | |
| Dere03g2455 | 286 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 69 | IPR013083 | - | |
| Dere03g2455 | 286 | SMART | fyve_4 | 3 | 69 | IPR000306 | GO:0046872 | |
| Dere03g2455 | 286 | SMART | ANK_2a | 190 | 219 | IPR002110 | GO:0005515 | |
| Dere03g2455 | 286 | SMART | ANK_2a | 223 | 252 | IPR002110 | GO:0005515 | |
| Dere03g2455 | 286 | PANTHER | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 | 2 | 280 | - | - | |
| Dere03g2455 | 286 | MobiDBLite | consensus disorder prediction | 157 | 179 | - | - | |
| Dere03g2455 | 286 | SUPERFAMILY | FYVE/PHD zinc finger | 8 | 69 | IPR011011 | - | |
| Dere03g2455 | 286 | SUPERFAMILY | Ankyrin repeat | 196 | 265 | IPR036770 | - | |
| Dere03g2455 | 286 | ProSiteProfiles | Ankyrin repeat profile. | 223 | 255 | IPR002110 | GO:0005515 | |
| Dere03g2455 | 286 | Pfam | FYVE zinc finger | 9 | 66 | IPR000306 | GO:0046872 | |
| Dere03g2455 | 286 | ProSiteProfiles | Ankyrin repeat region circular profile. | 223 | 250 | - | - | |
| Dere03g2455 | 286 | CDD | FYVE_scVPS27p_like | 7 | 64 | - | - | |
| Dere03g2455 | 286 | MobiDBLite | consensus disorder prediction | 129 | 185 | - | - | |
| Dere03g2455 | 286 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 8 | 68 | IPR017455 | - | |
| Dere03g2455 | 286 | Gene3D | - | 174 | 271 | IPR036770 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere03g2455 | 202 | 261 | MAP Kinase Kinase Kinase | AT3G58760 | 40.000 | 4.06e-08 | 52.0 |