Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2449 ATGGCGCTTTCGTCTTCAACAAAAATGGTGTCTCGAACACCCCACATCAAATTCTTCTTCATGGTGATGCTGATTCTGGGTGTTTTCACCCCAATTGGTGAGGGTAGTCACAGTGAATTTAAGGCGTCAGAGAGCTTGAAGGTTTCCACTTCGGACTTCGGAAACTCTGTGCGAGGAGTCATGGATATTTTGCAGCAGGTTATGTCCATCTTGTCTAAGTTTTCCAATGGCTTCGGAGATTTTCGACTCTCCAATGCCATTTCTGACTGCCTCGATTTGCTCGATATGTCTTTTGATGATCTCAGCTGGTCTTCCTCTGCTACTGAGAGTCCCAATGGCAAGCATAACAGCACTGGAAACTTGAGCTCTGATTTGAGGACATGGCTAAGTGCTGCAATTGCAAATCCAGAGACATGCATGGAAGGGTTCGAAGGCACCAACGGCATTGTGAAAGCTTTAGTATCATCTGGTGTTAGCCAAATGATCTCATTGGTCCAGCAACTCCTGATCCAGGTTAACCATGATCCGGACGACTACCCTACAAGCAAGGGACAATTCCCTTCATGGATCAAAGCAGGAGACCAGAAGCTTCTACAAGGAAGAGGGGTTACTGCAGATGTTGTAGTTGCAGCAGATGGAACTGGTAATTTCGCTAGAATAACAGATGCAGTGGAAGCAGCTCCTGATTATAGCATGAGACGCTTTGTGATATACGTAAAGAGGGGTGTGTACACAGAGTACGTGGAGATCAAGAAGAAGAAATGGAACATCATGATCATTGGTGATGGCATGGATGCCACTGTTATCACCGGTAATCGGAATTTCGCCGACGGTTGGACCACATTCCGATCGGCTACTTTTGCTGTTAGTGGTAGAGGGTTCATAGCACGAGACATTACCTTCCAGAACACAGCAGGTCCTCAGAAGCACCAAGCAGTGGCACTAAGAACAGACTCTGACCTCTCTGTCTTCTACCGCTGTGGCATCTATGGCTACCAAGACAGCCTCTACACCCACTCAATGCGTCAATTCTTCAGAGAATGCAAGATAACAGGCACTGTGGATTTCATTTTCGGATATGCCACCGTAGTGTTCCAAAATTGCCAGATTCTCGCAAGAAGAGGCCTCCCAGGTCAGAAAAACACTATCACAGCTCAAGGAAGAACAGACCCAAACGAGCCATCAGGATTCTCCATCCAATTCTGCAACATCAGTGCCGATCATGACCTTCTTCCCTTTCTTAGCTCCATAGAAACGTACCTTGGGAGGCCCTGGAAGCCATATTCTCGAACAGTTATCATGCAATCCTACATAAGCAATGCAGTGAGGCCACGAGGGTGGCTGGAGTGGAATGGGAATGTTTCGTTGGACACTTTGTTCTATGCAGAGTACATGAACAGTGGTCCAGGGGCTGGACTAGCGAACCGAGTCAGATGGCCAGGGTTCCACGTGTTGCGAGACTCGAACCAGGCTCGTACCTACACAGTGGCCCAGTTCATTGAAGGGAATCTATGGCTGCCTTCCACAGGCGTAACGTACACAGCTGGCTTAGGCGTTTAA 1560 0.4782 MALSSSTKMVSRTPHIKFFFMVMLILGVFTPIGEGSHSEFKASESLKVSTSDFGNSVRGVMDILQQVMSILSKFSNGFGDFRLSNAISDCLDLLDMSFDDLSWSSSATESPNGKHNSTGNLSSDLRTWLSAAIANPETCMEGFEGTNGIVKALVSSGVSQMISLVQQLLIQVNHDPDDYPTSKGQFPSWIKAGDQKLLQGRGVTADVVVAADGTGNFARITDAVEAAPDYSMRRFVIYVKRGVYTEYVEIKKKKWNIMIIGDGMDATVITGNRNFADGWTTFRSATFAVSGRGFIARDITFQNTAGPQKHQAVALRTDSDLSVFYRCGIYGYQDSLYTHSMRQFFRECKITGTVDFIFGYATVVFQNCQILARRGLPGQKNTITAQGRTDPNEPSGFSIQFCNISADHDLLPFLSSIETYLGRPWKPYSRTVIMQSYISNAVRPRGWLEWNGNVSLDTLFYAEYMNSGPGAGLANRVRWPGFHVLRDSNQARTYTVAQFIEGNLWLPSTGVTYTAGLGV 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2449 519 CDD PMEI-like_4 18 169 - -
Dere03g2449 519 Pfam Pectinesterase 206 503 IPR000070 GO:0030599|GO:0042545
Dere03g2449 519 SUPERFAMILY Pectin lyase-like 203 516 IPR011050 -
Dere03g2449 519 FunFam Pectinesterase 201 517 - -
Dere03g2449 519 ProSitePatterns Pectinesterase signature 2. 350 359 IPR033131 -
Dere03g2449 519 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 165 IPR035513 -
Dere03g2449 519 PANTHER PECTINESTERASE 60 507 - -
Dere03g2449 519 Gene3D Invertase/pectin methylesterase inhibitor family protein 45 173 IPR035513 -
Dere03g2449 519 Gene3D - 201 517 IPR012334 -
Dere03g2449 519 SMART PMEI_2 49 171 IPR006501 GO:0004857
Dere03g2449 519 Pfam Plant invertase/pectin methylesterase inhibitor 77 163 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2449 Dere-ChrDere03 38493302 38495657 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2449 18 517 Carbohydrate Esterase AT3G43270 61.748 0.0 668