Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2448 ATGGCTTCCTCATCTCTCAAACTCTTCCTCCTCCTCTTCGCGGTCTTTCTCTCACACGCTTGCGCTTCTTCTACAACAACATTACAAGCAAATCTCACCTCCATAAGATCTTTCTGCAAAACCACCCCATACCCAGAAGTTTGCTTCGATTCCTTGAAGCTCTCGATATCTATAAACATAAGCCCAAACATCATCACATACCTGCTTCAGTCTCTGCAAGTAGCCATATCCGAAGCCACCAAGCTCTCTGATCTATTCCACAACGCAGGAGGAGGAAGAGGAGGCCATTCCAATTTCAACCTCGTGGAGAAGCAAAGAGGGTCAATCCAAGACTGTAGGGAGCTTCATCAGTCAACCTTGGCTTCCCTCAAAAGATCACTTTCTGGGGTTCGTGATTCTCCCTCTTCTTCCAGGAAGCTAACCGATGCTAGAGCCTACCTCAGCGCCGCCATTACCAATAAGAACACTTGCTTAGAAGGGCTCGACTCTGCCACGGGCTCCCTCAAGCCTGTTCTAGTCGAATCTGTCATCAGAACCTACAAACATGTCAGCAATTCTCTCTCCATGCTTCCTAAGCCAGAGTTAAGAGGTTCGAGGGGCAATAAGAACCGGCGTCGTTTAATGGGGGCTCCGGCGTGGCTGACGAGCGAACACCATCGGATCTTGGAGAACTCGGACGGGGAAGAATACGATCCAGATGAGTTGCTTGTGGTGGCTGCAGATGGAACAGGGAACTTCAGCACCATTACTGGGGCTGTGAACTCTGCTCCCAACAATAGCTTGGACAGGACGGTGATCTATGTGAAGGCAGGGGTTTACGAAGAAAATGTGGAGATCCCAAGTTACAAGACCAACGTTGTTCTGCTCGGAGATGGAAGCGACGTCACTATCATTACCGGGAACAGAAGCGTTGGTGATGGGTGGACCACCTTCAGATCTGCAACTCTAGCTGTCTCCGGTGAGGGCTTTCTGGCACGTGACATAGCGATGCAGAACACGGCAGGCCCAGAGAAGCACCAAGCAGTGGCCTTGAGAGTAAACGCAGACTTAACCGCCTTCTACAGATGCGCCGTTTACGGCTATCAAGACACCCTCTACGTCCACTCCTTCCGACAGTTCTACAGAGAATGCGACATCTACGGCACCATAGACTTCATCTTCGGAAACGCAGCCGTCGTTTTCCAGGCCTGCGACATCGTTTCGAGACAGCCCCTCGCTCACCAGTTCACCGTCGTCACAGCCCAGTCACGAGACTCCCCGGACGAGGACACAGGAATCTCAATCCAGAATTGCTCCATTCTAGCCACCCAGGATCTCTATGCTAACTCCACCACCTTCAAGAGCTTCCTAGGACGCCCATGGAGGCCCTATTCTCGTACTGTGTACCTCGAGTCTTACATTGATGACTTTGTGGACCCAAAGGGGTGGACCAGGTGGTCCGATTCTGATGGTGATGATCCGAACTTGGAGAGATTGTACTATGGAGAGTACGAGAATTATGGGCCGGGTTCGGGTACGGGTGGTAGAGTGGACTGGGTTGGGCACCATGTGATGGAATATGGGGAAGCTTATAATTTCACGGTGTCTGAGTTCATTCTGGGTGATGCTTGGCTTCAGTCCACTTCATTCCCTTATGATGACGGGATTTGA 1650 0.5109 MASSSLKLFLLLFAVFLSHACASSTTTLQANLTSIRSFCKTTPYPEVCFDSLKLSISINISPNIITYLLQSLQVAISEATKLSDLFHNAGGGRGGHSNFNLVEKQRGSIQDCRELHQSTLASLKRSLSGVRDSPSSSRKLTDARAYLSAAITNKNTCLEGLDSATGSLKPVLVESVIRTYKHVSNSLSMLPKPELRGSRGNKNRRRLMGAPAWLTSEHHRILENSDGEEYDPDELLVVAADGTGNFSTITGAVNSAPNNSLDRTVIYVKAGVYEENVEIPSYKTNVVLLGDGSDVTIITGNRSVGDGWTTFRSATLAVSGEGFLARDIAMQNTAGPEKHQAVALRVNADLTAFYRCAVYGYQDTLYVHSFRQFYRECDIYGTIDFIFGNAAVVFQACDIVSRQPLAHQFTVVTAQSRDSPDEDTGISIQNCSILATQDLYANSTTFKSFLGRPWRPYSRTVYLESYIDDFVDPKGWTRWSDSDGDDPNLERLYYGEYENYGPGSGTGGRVDWVGHHVMEYGEAYNFTVSEFILGDAWLQSTSFPYDDGI 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2448 549 CDD PMEI-like_3 37 193 - -
Dere03g2448 549 PANTHER PECTINESTERASE 13 539 - -
Dere03g2448 549 Pfam Plant invertase/pectin methylesterase inhibitor 34 189 IPR006501 GO:0004857
Dere03g2448 549 NCBIfam pectinesterase inhibitor domain 7 190 IPR006501 GO:0004857
Dere03g2448 549 SUPERFAMILY Pectin lyase-like 234 546 IPR011050 -
Dere03g2448 549 ProSitePatterns Pectinesterase signature 2. 379 388 IPR033131 -
Dere03g2448 549 Pfam Pectinesterase 236 535 IPR000070 GO:0030599|GO:0042545
Dere03g2448 549 Gene3D - 234 549 IPR012334 -
Dere03g2448 549 FunFam Pectinesterase 230 549 - -
Dere03g2448 549 SMART PMEI_2 30 189 IPR006501 GO:0004857
Dere03g2448 549 FunFam Pectinesterase 31 192 - -
Dere03g2448 549 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 192 IPR035513 -
Dere03g2448 549 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 190 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2448 Dere-ChrDere03 38485535 38488975 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2448 27 549 Carbohydrate Esterase AT2G26440 66.352 0.0 710