Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2447 ATGGCATTCCAAGACTTCGATCTCATCACCGAACGAAGAAAAAATGACAGGAGACAGAAGCTCAAGCGCAGAATCGCCATCGGTGCTGTTTGCACCATTGTCATCATCGGTCTTATAGGTGCAGCTGCTTTCGTCATGGTCAGCCATAATGAAGACAGCAAAGTCAAAGACAATAACAAGAAATCCCCGTCATCTTCTCATGCTTCCTCCAACAACGGTCATTCTAATGGTAACTCTAACTCTAACTCCAATCAGATTTCCATAGGAGAGAAGATCGTGAAGACCATTTGCAACAACACGGACTACAAGATCAAATGCGAGACAAGTATTGGCAAGGAAGTGAAAAAGGACGCTAAACTCTTGCAACCCAAGGATATCGTCAAGGTTGCTATTAGTGTCGCTCAGGAAGAGGTCAATAAGGCCATCAATAAAACCTCGTCCATGGATTTCCAATCTGATAAAGACAAAGGTGCTTTCGAGGACTGCAAGCAGCTTCTGGCTGACGCAAAGGAAGAGCTCGGGTTTTCATCTTCAAGTGCAGGGTCAATTGATCTGAAGAAGCTGGCATCGACAACTTCGGATTTGAACAGTTGGCTTAGTGCGGTTATCTCGTACCAGCAAACATGTATCGACGGGTTTTCTGATGGGAAACTGAAGACGGATATTGAGAAGTTGTTTCAGGATTCTAAGGAGTATATCAGTAATACTCTTGCCATTGTGTCGCACTTGGCCTCCTTCGGTTCTTCTGCACAAAAAGAAGGATCCAGTCGTCACTTGCTGTCGACAGATGATGAAGGTCTTCCGGAGTGGATGAACGATGAGGATCGAAGGATGTTGAAGGCAGCGGATGATAAGCCTACTCCTAACGTCACCGTCGCTAGTGATGGCAGTGGAGACTTCAAAACCATCTCCGAAGCTTTGAAAGCCGTGCCAGAGAAATACGACGGACGGTATGTGGTTTATGTTAAAACAGGAACATATGAGGAGACTGTGACAGTGGAAAAGCGCATGGTAAACATAACCCTGTATGGTGATGGTTCACAAAAGAGCATCATCACCGGCAGCAAGAACTTCGTAGATGGAGTAAGGACTTTCCAAACAGCAACATTCGTGGTGCTAGGAGAAGGATTTTTAGGGAAAGCAATGGGATTCAGAAACACGGCAGGCCCAGAGAAGCACCAAGCAGTAGCAGCAAGAGTGCAAGCAGATCGTGCAGTGTTCGTCAACTGTCGTTTTGAAGGGTACCAAGACACTCTATACGCCCAAACCCACAGGCAGTTCTACCGGAGCTGCGTCATCTCCGGCACCGTCGACTTCATCTTCGGCGACGCCGCCGTCATCTTCCAGAACTGCATTATGAACATCCGAAAGCCCTCCGACAACCAGCAGAACATAGTCACAGCCCAAGGCAGAGTTGACAAACGACAAACCTCCGGCACCGTTCTGCAGAACTGCCAGATCAAAGCCGACGAGTCACTCGCCCCACAGAAAGACAAGTTCAAGAGCTACCTCGGGAGGCCATGGAAGGAGTACTCCAGAACCATCATTATGGAATCCGAGATCGAAGACGTAATCAGCCCAGAAGGGTGGATGCCATGGGAAGGTGACTTCGCGCTCAGCACACTGTACTACGCGGAGTTCAACAACACTGGAGCAGGCGCAAAAACTGATAACAGAGTGAAGTGGCCTGGCTACAAAGTTATCAACAAGGACGAAGCCAGCGAATACACTGTGGAGTCTTTCTTGATCGGAGATTGGATTAGCGGGATGGGCGTACCGGTTCAGCGGGGCTTGTATCACTAA 1803 0.482 MAFQDFDLITERRKNDRRQKLKRRIAIGAVCTIVIIGLIGAAAFVMVSHNEDSKVKDNNKKSPSSSHASSNNGHSNGNSNSNSNQISIGEKIVKTICNNTDYKIKCETSIGKEVKKDAKLLQPKDIVKVAISVAQEEVNKAINKTSSMDFQSDKDKGAFEDCKQLLADAKEELGFSSSSAGSIDLKKLASTTSDLNSWLSAVISYQQTCIDGFSDGKLKTDIEKLFQDSKEYISNTLAIVSHLASFGSSAQKEGSSRHLLSTDDEGLPEWMNDEDRRMLKAADDKPTPNVTVASDGSGDFKTISEALKAVPEKYDGRYVVYVKTGTYEETVTVEKRMVNITLYGDGSQKSIITGSKNFVDGVRTFQTATFVVLGEGFLGKAMGFRNTAGPEKHQAVAARVQADRAVFVNCRFEGYQDTLYAQTHRQFYRSCVISGTVDFIFGDAAVIFQNCIMNIRKPSDNQQNIVTAQGRVDKRQTSGTVLQNCQIKADESLAPQKDKFKSYLGRPWKEYSRTIIMESEIEDVISPEGWMPWEGDFALSTLYYAEFNNTGAGAKTDNRVKWPGYKVINKDEASEYTVESFLIGDWISGMGVPVQRGLYH 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2447 600 MobiDBLite consensus disorder prediction 62 84 - -
Dere03g2447 600 Pfam Plant invertase/pectin methylesterase inhibitor 92 239 IPR006501 GO:0004857
Dere03g2447 600 ProSitePatterns Pectinesterase signature 2. 433 442 IPR033131 -
Dere03g2447 600 CDD PMEI-like_3 95 245 - -
Dere03g2447 600 Gene3D Invertase/pectin methylesterase inhibitor family protein 89 245 IPR035513 -
Dere03g2447 600 Pfam Pectinesterase 289 585 IPR000070 GO:0030599|GO:0042545
Dere03g2447 600 PANTHER PECTINESTERASE 44 588 - -
Dere03g2447 600 Gene3D - 287 600 IPR012334 -
Dere03g2447 600 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 91 244 IPR035513 -
Dere03g2447 600 SUPERFAMILY Pectin lyase-like 287 589 IPR011050 -
Dere03g2447 600 FunFam Pectinesterase 89 244 - -
Dere03g2447 600 FunFam Pectinesterase 283 598 - -
Dere03g2447 600 MobiDBLite consensus disorder prediction 54 84 - -
Dere03g2447 600 NCBIfam pectinesterase inhibitor domain 82 243 IPR006501 GO:0004857
Dere03g2447 600 SMART PMEI_2 88 239 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2447 Dere-ChrDere03 38481531 38484093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2447 1 599 Carbohydrate Esterase AT2G26450 51.208 0.0 626