Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2446 ATGGCTACTGGTGGGAACACCTTCTGGGCCAATGAGCACAATATTGCAAGCAACGATGACAAGTCACTCATCAAAGTGTCTTTTAACTCCACTACAGAAGTAAATGATGAAAGCACGAGTTCCACTAACTTGCATGTTGCACTAAACTGGATATATAAAATAAGAACCATGAGAACACAAGAATTGGTGAGAGCTTTTGTGTTAGGATGGGTAACATGGGGGGCAATATTACCCGCGCTAGGAGAGGCTGCCATGGATGGCTACCCAGCACAGCACTTCCACTATGAATGCAGCCACACCAGATATCCTAATCTGTGTGATGAAACCTTGAGGGAAATGGGATCATTAGGGAATCAGAGTGTTGATATCATTTCAACTCTCGTTAACAAAACCTTGTTTGAAACCAGTCTCCCGGCTTCATATTTTGCAGAATTTGAAGCTCAACATCCCAAATCTACTGTCACAGGCTATTGCCAGGAACTGTTGAGCATGTCAGTGAAGAGGCTGGAGCAGTCCCTGAAGGCCCTGAAATCCCCAGGAAGAAACAAGCACGACATCCAAACATGGCTTAGTGCTTCTTTGACATTCCTACAATCTTGTAAAGACTACGCCGATTCCTCTGCAAGCGACCTCATAGGAAGAAGGGTCTCTAAGAAGATGGACTATCTCTCTGAACTGGGAAGTAACCCACTATCTCTCGTTAACCGAATCACAGGCACGTCAAAGACCACCACCAAAAGACGTCGTCGCCTGCTCGGCACTGAGGGGAATGAAACGGAAACAGAATTTCCCAGGTGGGTATCGGCCAAAGAGCGAAAACTAGTTGAGGGAAGCACTGTAAAAGCAAATGTGATAGTTGCACAGGACGGGTCTGGGAACTACAAGACAGTTTCTGAAGCCATTGAGGCTGCTTCGGGAAAAAGGTTCGTGATTTATGTGAAGGAAGGTGTTTATAAGGAGAAGATTCGAACCAGTAAGGATGGTATCACCTTGATAGGAGATGGCAAATATTCGACAATCATTGTTGGTGATGGCAGTAATTCCAAGGGCGCTTCTCTGTCTGGCTCCGCCACTTTCACAATCGACGGCGATGGATTCATTGCAAGAGACATCGGTTCGTACCTTGGGAGGCCTTGGAAGCAGTACTCTAGGTCAGTCGTCATGCAGTCCACCATTGATAATGCTATTTCAGGTAGGGGATGGATTGAATGGCCTGGTTATGGAAGATCAGTGCTGAGGACTGTGTATTTTGCAGAGTATGCCAATGAAGGGCCTGGTGCTGGCACTTCCAATAGAGTGAACTGGCCTGGCTTTCACGTTATTGCAGCCGATGAGGCTGTCAAATTCACTGTCGCCTCCTTCATTGCTGGAACTTCATGGCTTCCCTCCACTGGTGTCACCTTCATCTCTGGCCTCAACTGA 1422 0.4684 MATGGNTFWANEHNIASNDDKSLIKVSFNSTTEVNDESTSSTNLHVALNWIYKIRTMRTQELVRAFVLGWVTWGAILPALGEAAMDGYPAQHFHYECSHTRYPNLCDETLREMGSLGNQSVDIISTLVNKTLFETSLPASYFAEFEAQHPKSTVTGYCQELLSMSVKRLEQSLKALKSPGRNKHDIQTWLSASLTFLQSCKDYADSSASDLIGRRVSKKMDYLSELGSNPLSLVNRITGTSKTTTKRRRRLLGTEGNETETEFPRWVSAKERKLVEGSTVKANVIVAQDGSGNYKTVSEAIEAASGKRFVIYVKEGVYKEKIRTSKDGITLIGDGKYSTIIVGDGSNSKGASLSGSATFTIDGDGFIARDIGSYLGRPWKQYSRSVVMQSTIDNAISGRGWIEWPGYGRSVLRTVYFAEYANEGPGAGTSNRVNWPGFHVIAADEAVKFTVASFIAGTSWLPSTGVTFISGLN 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2446 473 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 97 238 IPR035513 -
Dere03g2446 473 SUPERFAMILY Pectin lyase-like 278 471 IPR011050 -
Dere03g2446 473 Pfam Pectinesterase 373 457 IPR000070 GO:0030599|GO:0042545
Dere03g2446 473 Pfam Pectinesterase 283 372 IPR000070 GO:0030599|GO:0042545
Dere03g2446 473 Pfam Plant invertase/pectin methylesterase inhibitor 97 233 IPR006501 GO:0004857
Dere03g2446 473 NCBIfam pectinesterase inhibitor domain 95 236 IPR006501 GO:0004857
Dere03g2446 473 Gene3D - 277 371 IPR012334 -
Dere03g2446 473 PANTHER PECTINESTERASE 93 372 - -
Dere03g2446 473 SMART PMEI_2 89 233 IPR006501 GO:0004857
Dere03g2446 473 Gene3D Invertase/pectin methylesterase inhibitor family protein 94 240 IPR035513 -
Dere03g2446 473 CDD PMEI-like_3 97 239 - -
Dere03g2446 473 Gene3D - 372 473 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2446 Dere-ChrDere03 38430574 38436739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2446 373 473 Carbohydrate Esterase AT3G49220 53.922 2.61e-28 116