Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2439 ATGATGTTCAATGCTCAGGGTCCTTCAAAAAAATCTTGTCTCCTTGCTGTCCTGAGTGGAAAATCATTTGACTATAAACAAAAGCAGAAGCAGGATGATTCTGAGGATCAATCTCCATACCCCCATCCAGAGCTTGCTTCATCTGGGCGTCTTGAGGTGAATGTTTTGATCAAACCGACTGCTGATGAGCTTCGTCGTGTTTTTGAAGCATTAGAGCCAAATTTTGTTTACCTGCAAGGCCAGCAGATAGAAGATAATGAACAAATTGGGTCTCTAGTATGGGACAATGTTGACCTGTCTAACCTGGAAGCCTTATGTGGATTGTTTTCTTCCAAATTACCTAATACCGTTTATTTGGAAATTCCTAAAGGAGAAAAATTGGCCGAGGCTCTACATTCTAAGGGAATTCCTTACACTATATATTGGAAAAGTGAATTTTCAAAGTATGCTGCATTACATTTTCGTCAAGCATTTTTTTCAGTGGCACAAAGCACATCCAGCCATACATGGGATGCTTTCCAGCTTGCTCTTGCATCTTTTAGATTATACTGTGTACAAAACAATGTCTTACCTTCCAACAGCCTGAAGGGTGGTAGCAAGCTTGAGCCACGAATGTTTGGTGACCCTCCCAACATTTATATTGGTCCATGTGAAGCAGACATGAATGGGGAGGAAAGCTCACCTGAGGCTACTTCTGCTGTGAAGGTTTATGATGACGATGTGAACATGAGATTTCTTGTGTGTGGAGTTCCCCACATGCTGGATACTTGCTTATTGAGATCATTGGAGCATGGACTCAATGCTCTCCTGTGTACAGAAATACGGGGATGTAAACTTCACAACCGGACAAGTGCTCCACCTCCACCTCTTCAGGCAGGGACATTCTCACGTGGTGTGGTGACCATGCGTTGTGATATGTCCACATGTAGTTCTGCTCATATATCACTTTTGGTGTCTGGTAGTGCAGATACTTGTTTTAATGATCAGCTTTTGGAGAATCATATTAAAAAGGAGTTGATTGAGAAGAGTCAGCTAGTTCAGGCATCAAATAATTGTGAACAAAGCAACTTACCTTCCTCTGAGCCTCGAAGGTCAGCCTCAGTAGCTGGTGGAGCTAGTGTATTTGAAGTTTGTATGCAGGTTCCTAAATGGGCTTCACAGGCTCTGAGACAGCTTGCACCGGAAGTGTCATACCGTAGCCTAGTCATGCTGGGAGTTGCCAGTATTCAAGGATTGCCTGTTGCTTCTTTTAAGAAGGATGATGCTGAACGTTTCCTTTTCTTTCGTTCTAGGCAGTCACAAGAAAATTGCCTTAATGACCCTGTTTCCTTTGGGCATCCTAGTTGGTTGATACCTCCTGCACCAACTCGAAAAAGATTGGAGCCTTCCTCTGGAATAAAGTCCATCAATGCTAGTAGCCTTCCGGTTGGGGATAGCAGTAATGGTAGACAGAAGTTGAACATTGCTGCAATGAGGCCAATCCCTCACTCACAACGTCAGAAGATTCTACCTTTTTCTGGATTGTCTGAGGGGGAAAGATTTGATGGAGACCGTGGAAAATCAAACTTGCCAATGGCTCCAACAAAGCATAATGTTGTAGGCCCTAATCCAGTTACAAATAGGAAATCTTTGTCAACTTCCTTTCAGGCTCAGCAGATTATTTCTTTAAATCCGCTGCCTATGAAGAAGCATGGTTGTGACAGAGCTCCAATACGAGCTTGTTCAGAGGAGGAATTTCTGAGGGATGTAATGCAGTTTCTGATCCTTCGTGGGCATTCTCGTCTAATTCCGCAAGGTGGTCTTGCTGAATTTCCTGAAGCCATTTTGAATGCAAAACGTCTCGACCTTTTTAACTTGTACAGAGAGGTGGTTTCTAGAGGAGGCTTTCATGTTGGGAACGGCATCAATTGGAAAGGACAAGTTTTCTCAAAGATGCGGAATCACACTTTGACAAATAGAATGACAGGAGTTGGCAATACATTAAAAAGACACTACGAAACTTATCTTCTAGAATATGAATTGGCTCATGATGACGTTGATGGAGAGTGCTGCTTGTTGTGCCATAGTAGTGCGGCTGGTGATTGGGTGAATTGTGGAATATGCGGTGAGTGGGCTCACTTTGGCTGTGATAGGCGCCAAGGACTTGGTGCTTTTAAGGACTATGCTAAAACTGATGGGCTAGAGTACGTTTGTCCTCATTGCAGCATCTCAAATTTCAGGAAAAAATCCCAGAAAACTTCAAATGGGTATTAA 2253 0.4305 MMFNAQGPSKKSCLLAVLSGKSFDYKQKQKQDDSEDQSPYPHPELASSGRLEVNVLIKPTADELRRVFEALEPNFVYLQGQQIEDNEQIGSLVWDNVDLSNLEALCGLFSSKLPNTVYLEIPKGEKLAEALHSKGIPYTIYWKSEFSKYAALHFRQAFFSVAQSTSSHTWDAFQLALASFRLYCVQNNVLPSNSLKGGSKLEPRMFGDPPNIYIGPCEADMNGEESSPEATSAVKVYDDDVNMRFLVCGVPHMLDTCLLRSLEHGLNALLCTEIRGCKLHNRTSAPPPPLQAGTFSRGVVTMRCDMSTCSSAHISLLVSGSADTCFNDQLLENHIKKELIEKSQLVQASNNCEQSNLPSSEPRRSASVAGGASVFEVCMQVPKWASQALRQLAPEVSYRSLVMLGVASIQGLPVASFKKDDAERFLFFRSRQSQENCLNDPVSFGHPSWLIPPAPTRKRLEPSSGIKSINASSLPVGDSSNGRQKLNIAAMRPIPHSQRQKILPFSGLSEGERFDGDRGKSNLPMAPTKHNVVGPNPVTNRKSLSTSFQAQQIISLNPLPMKKHGCDRAPIRACSEEEFLRDVMQFLILRGHSRLIPQGGLAEFPEAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISNFRKKSQKTSNGY 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2439 750 Gene3D - 570 676 IPR036431 GO:0003677
Dere03g2439 750 SUPERFAMILY ARID-like 574 688 IPR036431 GO:0003677
Dere03g2439 750 ProSiteProfiles ARID domain profile. 573 677 IPR001606 GO:0003677
Dere03g2439 750 CDD PHD_ARID4_like 683 734 - -
Dere03g2439 750 CDD ARID 575 673 - -
Dere03g2439 750 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 750 IPR042293 -
Dere03g2439 750 SMART ARID_2 570 673 - -
Dere03g2439 750 Pfam ARID/BRIGHT DNA binding domain 576 673 IPR001606 GO:0003677
Dere03g2439 750 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 677 739 IPR013083 -
Dere03g2439 750 SUPERFAMILY FYVE/PHD zinc finger 669 737 IPR011011 -
Dere03g2439 750 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2439 Dere-ChrDere03 38352161 38359571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2439 2 749 ARID Transcription Factor Family AT3G43240 64.714 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Dere03g2439 ARID 1.3e-13 CL0123