Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere03g2437 | ATGATGCACGTGTCAAATGCTCCTATTCATCTTGTAAAGATGTTATTGTACATAATTGTACATTGGAAATGGATATTACATGTTATTATATCTGTTCCTTTTTCTCCTTTATCCCTTTTGGGGGGTTTTATCTTGGAATTGGATTATCCAAGATATAGTCTGACCCGTGGACCTGAGACCCATGAGAGCGGCGTCACTAATTATTACTCTTTGATAATGTTTGTGGCGGAGCCGGAATTGCAACGCCAACCAGCAGCCATCATCAGTAGGTTCTTGAAGAAGGAACAAAAGAAGATGGGAAACATGGCCGGTAAGCTATGTGTGCCTCCCCTCGAACGTCGTGGAAGAAACAAGGGAAAGGTTCTTAAAAACAACACCAACTTCTCAGAACCAGAACTGGAGCAACATCAACCACACCAACAATCCTGGGATTACGAAGGACCCCGATCATCATTAGCCTGCGAAATCTGCGTGGAAACGAAGCCTCTGAAAGACTTCTTCAAGGTAGAGAACTGCACCCACTTCTACTGCATCCAATGCACAGTGAACTACATAGACTCCAAGCTCCAAGACAACGTGTTGACCCTCACGTGCCCATACCCAACATGTCCAGGACTTCTAGAACCTTCCTACTGTAGGACAATACTACCCCAGAAATTGTTGATGCGGTGGCAGAAGGCTCTGTGTGAGTCTGCGATCTCCGAGGAGGTCAAGTTTTATTGTCCCTTCGTGGACTGCTCTGCCCTTTTGATCAATGAGGGTGAGGATCGAAGAGGAGGGAAAACAAAGGCTATAAGAAAGTCTGTTTGTCCTCACTGTAGGAGAGAGATTTGTGTGCAGTGTAAGGCTCCATGGCATGCAAGATTGAGCTGTGTCAAGTTTCAGAGGTTGAAGCACAACGAGGATTCATTAATGGCGGATCTTGCTGAGAGAAAGAAATGGAGAAGGTGTCCAACGTGCAAGCAGTATGTTGAGAAGAAATATGGGTGCAATTACATCAGGTGTCAGAATGTGTTTTGTTACAACTGCGGAGCTGGCATCCAACGTCCCTTGCGTCATATATGCGAATGCTAG | 1074 | 0.4534 | MMHVSNAPIHLVKMLLYIIVHWKWILHVIISVPFSPLSLLGGFILELDYPRYSLTRGPETHESGVTNYYSLIMFVAEPELQRQPAAIISRFLKKEQKKMGNMAGKLCVPPLERRGRNKGKVLKNNTNFSEPELEQHQPHQQSWDYEGPRSSLACEICVETKPLKDFFKVENCTHFYCIQCTVNYIDSKLQDNVLTLTCPYPTCPGLLEPSYCRTILPQKLLMRWQKALCESAISEEVKFYCPFVDCSALLINEGEDRRGGKTKAIRKSVCPHCRREICVQCKAPWHARLSCVKFQRLKHNEDSLMADLAERKKWRRCPTCKQYVEKKYGCNYIRCQNVFCYNCGAGIQRPLRHICEC | 357 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere03g2437 | 357 | Pfam | IBR domain, a half RING-finger domain | 223 | 291 | IPR002867 | GO:0008270 | |
| Dere03g2437 | 357 | SUPERFAMILY | RING/U-box | 236 | 296 | - | - | |
| Dere03g2437 | 357 | MobiDBLite | consensus disorder prediction | 121 | 144 | - | - | |
| Dere03g2437 | 357 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 125 | 346 | IPR031127 | GO:0004842|GO:0016567 | |
| Dere03g2437 | 357 | MobiDBLite | consensus disorder prediction | 116 | 144 | - | - | |
| Dere03g2437 | 357 | ProSiteProfiles | TRIAD supradomain profile. | 150 | 357 | IPR044066 | - | |
| Dere03g2437 | 357 | SUPERFAMILY | RING/U-box | 299 | 347 | - | - | |
| Dere03g2437 | 357 | SUPERFAMILY | RING/U-box | 150 | 231 | - | - | |
| Dere03g2437 | 357 | SMART | ibrneu5 | 222 | 291 | IPR002867 | GO:0008270 | |
| Dere03g2437 | 357 | SMART | ibrneu5 | 297 | 355 | IPR002867 | GO:0008270 | |
| Dere03g2437 | 357 | FunFam | RBR-type E3 ubiquitin transferase | 149 | 235 | - | - | |
| Dere03g2437 | 357 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 235 | IPR013083 | - | |
| Dere03g2437 | 357 | ProSiteProfiles | Zinc finger RING-type profile. | 154 | 199 | IPR001841 | - | |
| Dere03g2437 | 357 | Gene3D | - | 289 | 357 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere03g2437 | Dere-ChrDere03 | 38337902 | 38342650 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere03g2437 | 146 | 345 | C3H Transcription Factor Family | AT2G19610 | 27.143 | 2.59e-19 | 86.7 |