Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2415 ATGTCATTCCAATTAACACCCATTCCCATGCTTCTGTCGAGTGAAGAAGTGATGGAGAAGAAGGTTAAGAAGAAGGAGGCTGTGAACGATGAAAGCAAAGAAGGCACTATTTTTGCCTCTTGCTCTTTCTCAAGCCTAGGACTCCACCCTATTTTATGCGACGAGCTCCGAGAAAGGATGGGTTTTGAAGCTCCAACCTTAGTACAAGCTCAGGCCATTCCTGTTGTTCTCTCAGGGCGACATGTACTCGTTAATGCTGCTACGGGCACCGGGAAGACTGTTGCATACTTGGCTCCAATTATTCATCATTTGCAGAATTATGATGATAGAATCCAGCGGTCTGATGGAACATGCGCGTTGGTTCTTGTACCAACGCGGGAGCTATGTTTGCAGGTTTATGAAATTCTTCAAAAGTTATTGCACCGATTTCACTGGATTGTACCTGGATATATAATGGGTGGTGAAAATAGATCAAAAGAAAAAGCCAGGCTACGCAAAGGCATATCAATTCTTGTAGCAACTCCTGGGCGCCTTTTAGATCACTTGAAGAATACATCATCATTCTTGTACACAAATTTGCGCTGGATAATCTTTGATGAAGCTGATCGGATTCTGGAATTAGGATTTGGAAAAGAAATAAAGGAAATACTAGATCATTTAGGTACTAGGAAATCAGGTTATGCTAACCAAGAGAATACAGATTCAAGACACTCTGGAGTTCTGAGACAGAATTTGCTTTTATCAGCTACTTTAAATGAAAAAGTGAATCATCTTGCTAAAATTAGTTTGGAGAATCCTGTGATGATTGGTCTTGATGGCAAAAGATCAGAACCAATTTCAACAATAGAAAGCCTTGGCTCTTCAGAATCTGATGAGGACAGTGAAGACAATGAAGAGAAGTATCCCAGTAAAATAATGAGCTCGCCAGTTGTAGATTATAAAGTCCCCACACAATTGATTCAGAGATATGTTAAAGTACCTTGTGGCTCCCGTCTTGCTGTGCTTCTTTCCATTCTGAAGTTTCTTTTTGAAAGGGAAGCTTCACAAAAGATTGTGGTATTCTTTTCGACATGCGATGCTGTAGACTTTCACTTTTCACTGTTAAGTGAATTCCAATTTTCATTTTATCCACAATCAGAAGCAGATGATAGACAGATGTTTCTGGGATGCAAAATGTTACGTCTGCATGGGAACATGGATCAGGAGGACCGGAGGACAACTTTTCAAACTTTTAAAACAGAGAAATCAGCTCTGCTCTTTTCCACTGATGTATCTGCTAGAGGCTTGGATTTTCCAAAAGTTAGATGCATTATACAATATGATTCTCCAGGGGAAGCTACTGAATATGTGCATAGAGTTGGTAGAACTGCTCGGCTGGGTGAAAGAGGCAAGTCATTGTTATTTTTGCAGCCTGTTGAAATAGATTATTTACAGGACTTGGAAAAACATGGCGTATCACTAACAGAGTATCCTCTCCTCAAAGTGTTGGATAGTTTCCCAATTCATGGTCAAAAGAACCACATCAAGAAGTTTGTTGCCATAGAGTCACATCCCTGGGTAGTTTGTCTCCAGAAGGCACTCGAATCCTTCATCATGTCTAAGCCCAAAATGGATAAACTTGCCAAGAGGGGATTTTGCTCTTGGGTCCGTGCCTACACAGCCCATCGTGGTGAATTGAAAAAGATTTTTATGATCAAGAAACTTCACTTGGGGCATGTAGCAAAAAGCTTTGCACTTAAACAACAACCTTCCTTAGTTGGAAAGTATCACCAGAAGCAAACCAAGAGGAAGAGATTTCAGAAGCAAAGCGGGCTGTCTAAAAGGAGAAAAATTACGTAA 1839 0.4057 MSFQLTPIPMLLSSEEVMEKKVKKKEAVNDESKEGTIFASCSFSSLGLHPILCDELRERMGFEAPTLVQAQAIPVVLSGRHVLVNAATGTGKTVAYLAPIIHHLQNYDDRIQRSDGTCALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILVATPGRLLDHLKNTSSFLYTNLRWIIFDEADRILELGFGKEIKEILDHLGTRKSGYANQENTDSRHSGVLRQNLLLSATLNEKVNHLAKISLENPVMIGLDGKRSEPISTIESLGSSESDEDSEDNEEKYPSKIMSSPVVDYKVPTQLIQRYVKVPCGSRLAVLLSILKFLFEREASQKIVVFFSTCDAVDFHFSLLSEFQFSFYPQSEADDRQMFLGCKMLRLHGNMDQEDRRTTFQTFKTEKSALLFSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGKSLLFLQPVEIDYLQDLEKHGVSLTEYPLLKVLDSFPIHGQKNHIKKFVAIESHPWVVCLQKALESFIMSKPKMDKLAKRGFCSWVRAYTAHRGELKKIFMIKKLHLGHVAKSFALKQQPSLVGKYHQKQTKRKRFQKQSGLSKRRKIT 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2415 612 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 41 70 IPR014014 GO:0003724
Dere03g2415 612 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 334 507 IPR001650 -
Dere03g2415 612 Gene3D - 11 272 IPR027417 -
Dere03g2415 612 PANTHER RNA HELICASE 29 543 - -
Dere03g2415 612 Gene3D - 328 609 IPR027417 -
Dere03g2415 612 SMART DUF4217_3 522 587 IPR025313 -
Dere03g2415 612 MobiDBLite consensus disorder prediction 281 302 - -
Dere03g2415 612 Pfam DEAD/DEAH box helicase 67 257 IPR011545 GO:0003676|GO:0005524
Dere03g2415 612 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 46 323 IPR014013 GO:0005524
Dere03g2415 612 CDD SF2_C_DEAD 319 469 - -
Dere03g2415 612 CDD DEADc_DDX31 52 270 - -
Dere03g2415 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 269 IPR027417 -
Dere03g2415 612 SMART helicmild6 378 460 IPR001650 -
Dere03g2415 612 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 197 205 IPR000629 -
Dere03g2415 612 SMART ultradead3 61 282 IPR014001 -
Dere03g2415 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 491 IPR027417 -
Dere03g2415 612 MobiDBLite consensus disorder prediction 590 612 - -
Dere03g2415 612 MobiDBLite consensus disorder prediction 587 612 - -
Dere03g2415 612 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 73 269 IPR014001 -
Dere03g2415 612 Pfam Domain of unknown function (DUF4217) 524 584 IPR025313 -
Dere03g2415 612 Pfam Helicase conserved C-terminal domain 337 460 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2415 Dere-ChrDere03 38038791 38045438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2415 28 469 Eukaryotic Initiation Factors Gene Family AT5G11200 26.638 6.27e-27 112