Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dere03g2415 | ATGTCATTCCAATTAACACCCATTCCCATGCTTCTGTCGAGTGAAGAAGTGATGGAGAAGAAGGTTAAGAAGAAGGAGGCTGTGAACGATGAAAGCAAAGAAGGCACTATTTTTGCCTCTTGCTCTTTCTCAAGCCTAGGACTCCACCCTATTTTATGCGACGAGCTCCGAGAAAGGATGGGTTTTGAAGCTCCAACCTTAGTACAAGCTCAGGCCATTCCTGTTGTTCTCTCAGGGCGACATGTACTCGTTAATGCTGCTACGGGCACCGGGAAGACTGTTGCATACTTGGCTCCAATTATTCATCATTTGCAGAATTATGATGATAGAATCCAGCGGTCTGATGGAACATGCGCGTTGGTTCTTGTACCAACGCGGGAGCTATGTTTGCAGGTTTATGAAATTCTTCAAAAGTTATTGCACCGATTTCACTGGATTGTACCTGGATATATAATGGGTGGTGAAAATAGATCAAAAGAAAAAGCCAGGCTACGCAAAGGCATATCAATTCTTGTAGCAACTCCTGGGCGCCTTTTAGATCACTTGAAGAATACATCATCATTCTTGTACACAAATTTGCGCTGGATAATCTTTGATGAAGCTGATCGGATTCTGGAATTAGGATTTGGAAAAGAAATAAAGGAAATACTAGATCATTTAGGTACTAGGAAATCAGGTTATGCTAACCAAGAGAATACAGATTCAAGACACTCTGGAGTTCTGAGACAGAATTTGCTTTTATCAGCTACTTTAAATGAAAAAGTGAATCATCTTGCTAAAATTAGTTTGGAGAATCCTGTGATGATTGGTCTTGATGGCAAAAGATCAGAACCAATTTCAACAATAGAAAGCCTTGGCTCTTCAGAATCTGATGAGGACAGTGAAGACAATGAAGAGAAGTATCCCAGTAAAATAATGAGCTCGCCAGTTGTAGATTATAAAGTCCCCACACAATTGATTCAGAGATATGTTAAAGTACCTTGTGGCTCCCGTCTTGCTGTGCTTCTTTCCATTCTGAAGTTTCTTTTTGAAAGGGAAGCTTCACAAAAGATTGTGGTATTCTTTTCGACATGCGATGCTGTAGACTTTCACTTTTCACTGTTAAGTGAATTCCAATTTTCATTTTATCCACAATCAGAAGCAGATGATAGACAGATGTTTCTGGGATGCAAAATGTTACGTCTGCATGGGAACATGGATCAGGAGGACCGGAGGACAACTTTTCAAACTTTTAAAACAGAGAAATCAGCTCTGCTCTTTTCCACTGATGTATCTGCTAGAGGCTTGGATTTTCCAAAAGTTAGATGCATTATACAATATGATTCTCCAGGGGAAGCTACTGAATATGTGCATAGAGTTGGTAGAACTGCTCGGCTGGGTGAAAGAGGCAAGTCATTGTTATTTTTGCAGCCTGTTGAAATAGATTATTTACAGGACTTGGAAAAACATGGCGTATCACTAACAGAGTATCCTCTCCTCAAAGTGTTGGATAGTTTCCCAATTCATGGTCAAAAGAACCACATCAAGAAGTTTGTTGCCATAGAGTCACATCCCTGGGTAGTTTGTCTCCAGAAGGCACTCGAATCCTTCATCATGTCTAAGCCCAAAATGGATAAACTTGCCAAGAGGGGATTTTGCTCTTGGGTCCGTGCCTACACAGCCCATCGTGGTGAATTGAAAAAGATTTTTATGATCAAGAAACTTCACTTGGGGCATGTAGCAAAAAGCTTTGCACTTAAACAACAACCTTCCTTAGTTGGAAAGTATCACCAGAAGCAAACCAAGAGGAAGAGATTTCAGAAGCAAAGCGGGCTGTCTAAAAGGAGAAAAATTACGTAA | 1839 | 0.4057 | MSFQLTPIPMLLSSEEVMEKKVKKKEAVNDESKEGTIFASCSFSSLGLHPILCDELRERMGFEAPTLVQAQAIPVVLSGRHVLVNAATGTGKTVAYLAPIIHHLQNYDDRIQRSDGTCALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILVATPGRLLDHLKNTSSFLYTNLRWIIFDEADRILELGFGKEIKEILDHLGTRKSGYANQENTDSRHSGVLRQNLLLSATLNEKVNHLAKISLENPVMIGLDGKRSEPISTIESLGSSESDEDSEDNEEKYPSKIMSSPVVDYKVPTQLIQRYVKVPCGSRLAVLLSILKFLFEREASQKIVVFFSTCDAVDFHFSLLSEFQFSFYPQSEADDRQMFLGCKMLRLHGNMDQEDRRTTFQTFKTEKSALLFSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGKSLLFLQPVEIDYLQDLEKHGVSLTEYPLLKVLDSFPIHGQKNHIKKFVAIESHPWVVCLQKALESFIMSKPKMDKLAKRGFCSWVRAYTAHRGELKKIFMIKKLHLGHVAKSFALKQQPSLVGKYHQKQTKRKRFQKQSGLSKRRKIT | 612 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dere03g2415 | 612 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 41 | 70 | IPR014014 | GO:0003724 | |
Dere03g2415 | 612 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 334 | 507 | IPR001650 | - | |
Dere03g2415 | 612 | Gene3D | - | 11 | 272 | IPR027417 | - | |
Dere03g2415 | 612 | PANTHER | RNA HELICASE | 29 | 543 | - | - | |
Dere03g2415 | 612 | Gene3D | - | 328 | 609 | IPR027417 | - | |
Dere03g2415 | 612 | SMART | DUF4217_3 | 522 | 587 | IPR025313 | - | |
Dere03g2415 | 612 | MobiDBLite | consensus disorder prediction | 281 | 302 | - | - | |
Dere03g2415 | 612 | Pfam | DEAD/DEAH box helicase | 67 | 257 | IPR011545 | GO:0003676|GO:0005524 | |
Dere03g2415 | 612 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. | 46 | 323 | IPR014013 | GO:0005524 | |
Dere03g2415 | 612 | CDD | SF2_C_DEAD | 319 | 469 | - | - | |
Dere03g2415 | 612 | CDD | DEADc_DDX31 | 52 | 270 | - | - | |
Dere03g2415 | 612 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 37 | 269 | IPR027417 | - | |
Dere03g2415 | 612 | SMART | helicmild6 | 378 | 460 | IPR001650 | - | |
Dere03g2415 | 612 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 197 | 205 | IPR000629 | - | |
Dere03g2415 | 612 | SMART | ultradead3 | 61 | 282 | IPR014001 | - | |
Dere03g2415 | 612 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 79 | 491 | IPR027417 | - | |
Dere03g2415 | 612 | MobiDBLite | consensus disorder prediction | 590 | 612 | - | - | |
Dere03g2415 | 612 | MobiDBLite | consensus disorder prediction | 587 | 612 | - | - | |
Dere03g2415 | 612 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 73 | 269 | IPR014001 | - | |
Dere03g2415 | 612 | Pfam | Domain of unknown function (DUF4217) | 524 | 584 | IPR025313 | - | |
Dere03g2415 | 612 | Pfam | Helicase conserved C-terminal domain | 337 | 460 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dere03g2415 | Dere-ChrDere03 | 38038791 | 38045438 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dere03g2415 | 28 | 469 | Eukaryotic Initiation Factors Gene Family | AT5G11200 | 26.638 | 6.27e-27 | 112 |