Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2414 ATGAAGGCTTTACCAAATGGTTACTTGCCTAATTCTGGCGAAGGAGAAAGAAAGACAATCAACTCAGAGTTATGGCATGCATGTGCTGGACCCTTGGTTTCTTTACCTCCTGTTGGAAGTCTTGTCATTTACTTCCCTCAAGGACACAGTGAGCAAGTTGCGGCATCCATGCAAAAGGAGGCTGATTTCATACCTAGCTACCCTAACCTTCCGTCCAAGTTGATTTGCATGCTTCACAATGTTGCACTGCATGCTGATCTGGAAACTGATGAGGTCTATGCACAGATGACCCTTCAACCTGTAAACAAATATGACAAGGAAGCAATACTGGCATCAGACATGGGTCTGAAGCAAAGCCGACAACCTGCTGAGTTCTTCTGCAAAACCCTGACAGCTAGTGACACAAGCACACATGGTGGATTTTCTGTACCCCGTAGAGCAGCAGAGAAAATATTTCCACCTCTGGATTTTTCAATCCAACCTCCCGCTCAGGAGATTGTCGCCAAAGATTTACATGACAATACATGGACATTCAGACATATTTATCGCGGACAACCGAAGAGGCATCTGCTGACTACTGGTTGGAGTGTCTTTGTGAGCACAAAAAGACTATTTGCTGGAGATTCTGTTCTTTTCATTCGAGATGAAAAACAGCAACTTCTTTTAGGTATAAGGCGTGCTAATAGACAGCAGCCTGCTCTCTCTTCATCAGTCATATCCAGTGACAGCATGCATATAGGCATTCTTGCTGCTGCAGCTCACGCTGCTGCAAATAACAGCCCATTTACCATATTTTACAATCCAAGGGCTAGCCCCTCTGAATTTGTTATTCCATTGGCTAAGTATAATAAAGCCATGTACACCCAAGTTTCTCTGGGAATGAGGTTTAGAATGATGTTTGAGACTGAGGAGTCAGGAGTTCGCAGACACATGGGTACAATCACAGGGATCAGTGACTTGGACCCTGTGCGCTGGAAAAATTCACAGTGGCGCAATCTCCAGGTTGGATGGGATGAATCAACAGCTGGCGAGCGGCCAAGCAGAGTTTCAATTTGGGACATTGAACCCGTAGTGACTCCTTTCTACATTTGCCCACCTCCTTTTTTCAGGCCCAAGTTCCCAAAGCAACCAGGAATGCCAGATGATGAGTTTGACATGGAAAATGCTTTCAAGAGAGCTATGCCGTGGCTTGGAGATGACTTTGGCATGAAGGATGCCTCAAGTTCAATGTTTCCTGGTTTGAGTCTAGTTCAGTGGATGAGCATGCAACAGAATAATCAGTTTTCTGCTACCCCATCAGGAATTTTCCCATCCATGCTTTCATCCAATTCCCTTCATAATAACCTCAGCACTGATGATCCATCCAAATTATTGAGCTTTCAAGCCCCTGTCCTCTCTGCACCAAATCTTCAATTTAACAAACCAAATTTACCAAGCCAAGTCAACCAATTGCAACAGGCCCCAGCATCATGGCCTCAGCAGCAACAGCAGCAGCTACAATCATTGTTACAAACACCTGGAAACCACCTCCAGCAGCAGAGGCAGCAACAGCAGCTCCCTGAAGCACAAAATCTGTCACATCAGCAGCAACAACAGCCTCAATTGCATCAACAGCGAGCACAACAACCACAGCAGCAGCAGCAACAGCAACAGTCATGTCAACAGGCCATTATAAATAATGGGGCTATTGGTTCTAGCCACATTCCAAATCAGAGCGTGCAGCAACCAGTAACCTACCCCCAGCTTCAGCAACAGCAATTACTCTCAGGCGGTATCCCACTCCAGCAAAGCATTCAATTGGCTAATAAAAATACATTCCCGCTCACAACCTTACCACAAGATTCACAATTTCAGCAACAGATAGACCAGCAAGCTTGTCTCTTACAGAGGCAGCAGCAACATTCCTCATTGCAATTATTGCAACAAAGCCTGTCACAGAGGGCACCACAACAACCACAAGTGGTGCCACAACAAAACCTCTCCGAGCAACAACTGCAGTTACAGTTGCTACAAAAATTGCAGCAACAGCAGCAGCAGCAGCAACAACAACAACAACAACAGCAACTTCTTTCTCCAGCTAGTTCACTTTTGCAACCTCAGCTGCTACAGCAACAGCAAGCTCACCAACAAAACCCGCAGCTACCACAATTGCCTCTATCTCAGCATCAGTCTCAACAGGTTAGCAACAATGCATTATCTGCAGAGAAGCTTCTGAACAGTAACGGTTTTTCTTCACCTCTGATGCAATCACAACAGCTTCCTTTGAACCAACCCCAGAATACACAAAACCTACTTACAACTACCAGAGCTCCTTCTAGCCTTACAGATGGAGATGCCCCTTCGTGTTCAACCTCACCATCAACTAATAACTGCCAGGTATCTACACCAAACCTCCTGAAGAGAAATCAACAAGTGCCAGCCACATTAGGGGGGACCTTGGTTGTTGAGCCCTCTACTAATCTGGTACAGGAGCTTCAGGGCAAGTCTGACATCCAAATCAAACATGAGTTGCCAGGTGTAAAAGGCCCTGACCAGCTGAAGTATAAAGGGACAATAATTGATCAGCTGGAAGCTTCTTCTTCTGGAACATCTTACTGTCTTGATCCTTGCAGCGTGCAGCCAAACTTCCCCCTTCCTAACTTTTGCATGGATGGGGATGTCCAATCGCATCCTAGGAACAATCTACCATTTGCCTCTAATCTTGATGGACTAACGCCTGATACTTTGCTCTCTAGAGGGTATGACTCTCAAAAAGATCTTCAAAATTTGCTCTCTAATTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCAACTGCTGCCATCAGCTCACAGTCATTCGGTGTGCCAAGCATGCCCTTTAAGCCTGGTTGCTCAAGTGATGTTGCCATCAATGAAACTGGAGTTTTGAATAATAGCTTGTGGACTAACCAGACTCAACGAATGCGAACATATACTAAGGTTCAGAAACGTGGCTCTGTTGGAAGATGCATTGATGTCACTCGTTACAAGGGATATGATGAACTCCGGCATGACTTGGCTCGGATGTTTGGGATTGAAGGGCAACTAGAAGATCCTCAGAGGACTGACTGGAAACTAGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATACTCTCATCTGCTGAAGTGCAGCAAATGAGCTTAGATGGGGATTTAGGTAATGTTCCAATATCCAACCAAGCTTGTAGTGGGACTGATAGTGGTAATGCATGGAGGGGACAATACGATGATAACTCTGCTGCCTCATTTAACCGATGA 3336 0.4529 MKALPNGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVIYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADLETDEVYAQMTLQPVNKYDKEAILASDMGLKQSRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSIQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRHMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPDDEFDMENAFKRAMPWLGDDFGMKDASSSMFPGLSLVQWMSMQQNNQFSATPSGIFPSMLSSNSLHNNLSTDDPSKLLSFQAPVLSAPNLQFNKPNLPSQVNQLQQAPASWPQQQQQQLQSLLQTPGNHLQQQRQQQQLPEAQNLSHQQQQQPQLHQQRAQQPQQQQQQQQSCQQAIINNGAIGSSHIPNQSVQQPVTYPQLQQQQLLSGGIPLQQSIQLANKNTFPLTTLPQDSQFQQQIDQQACLLQRQQQHSSLQLLQQSLSQRAPQQPQVVPQQNLSEQQLQLQLLQKLQQQQQQQQQQQQQQQLLSPASSLLQPQLLQQQQAHQQNPQLPQLPLSQHQSQQVSNNALSAEKLLNSNGFSSPLMQSQQLPLNQPQNTQNLLTTTRAPSSLTDGDAPSCSTSPSTNNCQVSTPNLLKRNQQVPATLGGTLVVEPSTNLVQELQGKSDIQIKHELPGVKGPDQLKYKGTIIDQLEASSSGTSYCLDPCSVQPNFPLPNFCMDGDVQSHPRNNLPFASNLDGLTPDTLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTAAISSQSFGVPSMPFKPGCSSDVAINETGVLNNSLWTNQTQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGNVPISNQACSGTDSGNAWRGQYDDNSAASFNR 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2414 1111 Gene3D - 124 227 IPR015300 -
Dere03g2414 1111 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dere03g2414 1111 Coils Coil 660 690 - -
Dere03g2414 1111 FunFam Auxin response factor 289 361 - -
Dere03g2414 1111 MobiDBLite consensus disorder prediction 471 553 - -
Dere03g2414 1111 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Dere03g2414 1111 SMART B3_2 126 228 IPR003340 GO:0003677
Dere03g2414 1111 Pfam AUX/IAA family 981 1070 IPR033389 -
Dere03g2414 1111 FunFam Auxin response factor 124 228 - -
Dere03g2414 1111 Gene3D - 979 1073 - -
Dere03g2414 1111 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 555 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dere03g2414 1111 CDD B3_DNA 125 217 IPR003340 GO:0003677
Dere03g2414 1111 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Dere03g2414 1111 FunFam Auxin response factor 979 1073 - -
Dere03g2414 1111 ProSiteProfiles PB1 domain profile. 984 1077 IPR000270 GO:0005515
Dere03g2414 1111 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Dere03g2414 1111 MobiDBLite consensus disorder prediction 769 793 - -
Dere03g2414 1111 SUPERFAMILY CAD & PB1 domains 997 1062 - -
Dere03g2414 1111 Gene3D - 289 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2414 Dere-ChrDere03 38007267 38015049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2414 1 487 B3 DNA Binding Superfamily AT1G19220 83.778 0.0 849
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere03g2414 AUX_IAA 1.9e-09 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g2414 03 38007267 38015049 Dere03g2414 03 38007267 38015049 ECH