Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2408 ATGATGCAGCAGCATAGGCTAAAACAACATCCAATGATGCAACAGTCTCTCTACCACCACCCTGGTCTCCTTGCAGCTCCTCAGATAGAGCCTATCTTAAGTGGAAATCTACCTCCTGGCTTTGATTCAAGTACATGCCGCAGTGTATACATTGGCAACATTCACCCTCAGGTTACAGAATCCCTTCTTCAAGAGGTTTTCTCAAGTACAGGTCCTCTTGAAGGATGCAAGCTCATTAGGAAAGAGAAGTCTTCCTATGGATTTGTGGATTATTTTGATCGCAGATCAGCTGCACTTGCTATTGTAACTCTTAATGGGAGGCATATTTTTGGGCAGCCTATCAAAGTTAACTGGGCATATGCCAGCAGTCAGAGGGAGGATACTTCAGGTCACTATAATATTTTTGTTGGCGATCTTAGTCCTGAAGTTACAGATGCTACATTGTATGCTTGTTTCTCTGGATATCCTAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACAGGCCGCTCCAGGGGATTTGGTTTTGTTTCTTTTTCTAACCAGCAGGATGCCCAAGGTGCCATAAATGATTTGAATGGGAAGTGGCTTGGAAGTAGACAGATTCGTTGTAACTGGGCCACAAAAGGGGCTAATGCAAATGATGACAAGCAGAGTTCAGATTCTAAAAGTGTTGTGGAGCTGACAAATGGAACATCTGAAGAAGGCCAAGAAAAGATCAATGATGACACTCCTGAGAAGAATCCTCAATATACCACCGTCTATGTCGGCAATCTTGCTCCAGAGGTTACTTCTCTTGATTTACACCGTCATTTTCATGCCCTTGGTGCTGGAGCCATTGAAGATGTTCGGGTTCAAAGAGACAAAGGATTTGGATTTGTGAGATACAGTACACATGCTGAAGCAGCTCTTGCTATACAGATGGGTAATGCGCGGATTCTGTTTGGCAAACCAATCAAGTGCTCATGGGGTAGCAAGCCTACCCCCCCAGGAACAGTGTCTACCCCTCTTCCCCCACCTACTGCTGCACATATGCCGGGCTTCTCAGCCAGTGACTTTGCAGCATATGAACGACAATTAGCGTTGAGCAAAATGGGTGGAGCACAGGCCCTCGTGCATCAGCAGGCACAGCAAGCCCTGAAGCAGGCAGCCATGGGAATGGGTGCACCAGGGGCTAGTTACGATGCAGGATACCCGAGTGTTGCGAGTACGCAGCACCTTATGTATTATCAGTAA 1239 0.4633 MMQQHRLKQHPMMQQSLYHHPGLLAAPQIEPILSGNLPPGFDSSTCRSVYIGNIHPQVTESLLQEVFSSTGPLEGCKLIRKEKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHYNIFVGDLSPEVTDATLYACFSGYPSCSDARVMWDQKTGRSRGFGFVSFSNQQDAQGAINDLNGKWLGSRQIRCNWATKGANANDDKQSSDSKSVVELTNGTSEEGQEKINDDTPEKNPQYTTVYVGNLAPEVTSLDLHRHFHALGAGAIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILFGKPIKCSWGSKPTPPGTVSTPLPPPTAAHMPGFSASDFAAYERQLALSKMGGAQALVHQQAQQALKQAAMGMGAPGASYDAGYPSVASTQHLMYYQ 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2408 412 Gene3D - 230 331 IPR012677 -
Dere03g2408 412 Gene3D - 40 125 IPR012677 -
Dere03g2408 412 CDD RRM1_PUB1 49 119 - -
Dere03g2408 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 121 IPR000504 GO:0003723
Dere03g2408 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 327 IPR000504 GO:0003723
Dere03g2408 412 SUPERFAMILY RNA-binding domain, RBD 245 332 IPR035979 GO:0003676
Dere03g2408 412 SUPERFAMILY RNA-binding domain, RBD 46 211 IPR035979 GO:0003676
Dere03g2408 412 FunFam Oligouridylate-binding protein 1C 1 130 - -
Dere03g2408 412 Gene3D - 126 224 IPR012677 -
Dere03g2408 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
Dere03g2408 412 CDD RRM2_PUB1 131 210 - -
Dere03g2408 412 SMART rrm1_1 133 206 IPR000504 GO:0003723
Dere03g2408 412 SMART rrm1_1 254 323 IPR000504 GO:0003723
Dere03g2408 412 SMART rrm1_1 48 117 IPR000504 GO:0003723
Dere03g2408 412 MobiDBLite consensus disorder prediction 212 251 - -
Dere03g2408 412 FunFam Oligouridylate-binding protein 1C 230 331 - -
Dere03g2408 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 204 IPR000504 GO:0003723
Dere03g2408 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 255 321 IPR000504 GO:0003723
Dere03g2408 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 115 IPR000504 GO:0003723
Dere03g2408 412 MobiDBLite consensus disorder prediction 212 236 - -
Dere03g2408 412 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 44 330 - -
Dere03g2408 412 FunFam oligouridylate-binding protein 1-like isoform X2 131 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2408 Dere-ChrDere03 37908812 37915031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2408 48 321 Eukaryotic Initiation Factors Gene Family AT3G16380 26.117 1.80e-20 91.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g2408 03 37908812 37915031 Dere03g2408 03 37908812 37915031 ECH