Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2407 ATGTCGAGCTCGTCGGACTATTTGGATTTTTCCGGCCAGAAGCCGGCCAAGTTGCCGGAGAAGTCTTCCTTCTCTCAGACTTGTAGTTTATTGAGTCAGTACCTGAAGGAGAAGGGCAGCTTCGGAGATCTCACCCTCGGAATGACATGCAACACCGAAGCAACTGGGTCAACTGAGGCATCATGTCATTCTGCAACAACCATGAACCTGTTTCCAACCAAGGAAAACACTGTGGCACCACAGAATCTAGTCTCTAATTCCAGTGTTGCTAAGCCTGTGACTACGGAGCCTAAAGCTTCACAGCTGACGATCTTTTATGCCGGACAAGTCATCGTTTTCGATGATTTCCCGGCCGAGAAAGCCAAGGAGATCATGTCTCTCGCCAGCAAAGGAAACTCCCAAACCCAGAACACCTCTGTCTATACTTTTGCTCAAAGCGTGTCATCGTTTCCTGCTAATTTGGTCGGAGCCTCTGCTGATCCCGGTGTTCCAATTCCTCCTCGTCCTCAAGCACCATCCAGACCTGTTGTTTGTGATCTACCTATCATGCGAAACGCATCGCTTCACCGGTTCTTGGAGAAGAGAAAGGATAGAATTGCTGCCAAAGCACCATATGAAACTAACAAACCTACGGCGGCTCCTAGTAAGCCAGTTGAATTCATGCCATGGCTGGGATTAGCTGCCAAGTCACCCCAAAACTGA 702 0.49 MSSSSDYLDFSGQKPAKLPEKSSFSQTCSLLSQYLKEKGSFGDLTLGMTCNTEATGSTEASCHSATTMNLFPTKENTVAPQNLVSNSSVAKPVTTEPKASQLTIFYAGQVIVFDDFPAEKAKEIMSLASKGNSQTQNTSVYTFAQSVSSFPANLVGASADPGVPIPPRPQAPSRPVVCDLPIMRNASLHRFLEKRKDRIAAKAPYETNKPTAAPSKPVEFMPWLGLAAKSPQN 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2407 233 ProSiteProfiles Tify domain profile. 95 130 IPR010399 -
Dere03g2407 233 Pfam tify domain 96 129 IPR010399 -
Dere03g2407 233 MobiDBLite consensus disorder prediction 1 20 - -
Dere03g2407 233 SMART tify_2 95 130 IPR010399 -
Dere03g2407 233 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 17 215 IPR040390 -
Dere03g2407 233 Pfam Jas motif 181 205 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2407 Dere-ChrDere03 37895811 37897401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2407 1 229 Tify Gene Family AT1G19180 41.825 6.06e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Dere03g2407 tify 1.6e-19 No_clan