Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2351 ATGAATTCTTCGGAGAATTCTAGCGAAGAAACTGATCAGCAAGAAGATGCCGATTCGGGAGGGACCAGACGCTTCTACGAGTGCACATTTTGCAGGAGGGGCTTCACAAACGCCCAGGCATTAGGGGGTCACATGAATATCCATAGAAAAGACAGAGCCAAGGCCAAGCAAGTCACACTCGCACCTAATTCTTCACTTCCAAACAAATTCCCCTGTGAGGACTCCTTAGCATCAGCCTCCCCTTTCCTTTCAGAAATATCATCAGGCCAACAATCCACAACGTATTACTCCATTTTCGAGGCTCAGAGAAACTATAACATGTATTTCCAGCCTTCTTCTGCACCAAACCCTAGAAACCCTTCTCCTGCATCATATGCCTTTCCGTATGAGTATCTTAATCCAAGGTCTCATCGTCAGTCTGTGGATATGAACCAAGAGCTTCTAGGGGCCAATTTGAGTCTCCAGATTGGTCCAACCCCGGTGGAAAATAATCAGAAAGATGGTGAAGTGGACTTAGAGCTCAGGCTTGGCCATCATCGATACTGA 546 0.4652 MNSSENSSEETDQQEDADSGGTRRFYECTFCRRGFTNAQALGGHMNIHRKDRAKAKQVTLAPNSSLPNKFPCEDSLASASPFLSEISSGQQSTTYYSIFEAQRNYNMYFQPSSAPNPRNPSPASYAFPYEYLNPRSHRQSVDMNQELLGANLSLQIGPTPVENNQKDGEVDLELRLGHHRY 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2351 181 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Dere03g2351 181 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 53 IPR013087 -
Dere03g2351 181 MobiDBLite consensus disorder prediction 1 20 - -
Dere03g2351 181 Gene3D Classic Zinc Finger 3 74 - -
Dere03g2351 181 PANTHER OS07G0101800 PROTEIN 2 179 - -
Dere03g2351 181 SUPERFAMILY beta-beta-alpha zinc fingers 23 52 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2351 Dere-ChrDere03 36985677 36986222 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2351 19 80 C2H2 Transcription Factor Family AT3G53820 54.839 1.04e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere03g2351 None None None