Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2350 ATGGAGAGAAACAGTTTGAGCACCGGCTTGAAAGACCATATCCTGAATGGTACTGTCACCACCAACAGCAACAAGAACCACATGATGAAAGAATCTTGGGACTGCAATAACTCTCAGATCAGCAGTGGAGGAGATGAGTACATTAATGGATTCTCGTGGCCTCCAAGATCATACACTTGTAGCTTCTGCAAAAGGGAATTCAGATCTGCTCAAGCCCTTGGTGGCCATATGAACGTGCATAGGAGGGACAGAGCCAGGCTCAGGCAGTCACCTCCAACTATAACTGATGGCCGCTCCCACATGCCCAACCTTAACCTTAACCCTACCTCTGGCCCTAGCTTTTCAACCTCACCTTTGTCCTTATTATCATCTCCATCTTCTTCTACTATGCTCAGAAAACCATTCTCTGCTAGCACCTTACCTTCCTTGGTTTCTCCAACTATGTCTTCTTCATCTTCTCCACCCTCTGCATCTCCTTCTTCTGAGTTGAAAAAATGGGTTGTGGACGGTATCTTGTTGAACCCTTCAAGCGCAAAGGCCTCAGGATCTCCAAAATTGAAGAATGCAGAATCTTTATCTCGGTTTGGAGAATATGATGATGCCTTTGCGCAAGAAGATGGGTGCAAAGTGTTACAGAAGGCTGAGGTCATCAGGTTGGACTTGGAGATAGGTTTGCTTAGTGATTCCAAGGATGATTTAGATCTGGAGCTTCGATTGGTTAACCCAGTTTTCCATTTGTTTGACGACTACCTTGTTCACCATATTGGGCACTTCGAAAACGATGCACATATAATTACTGTTTCATGTGGCCATTTATTGGTTTACAAGCCATCCCAGGCTGCATATAGCTCAGGCCTGAGAACCAACCAGAGAGAACAAACTTCTTCTCAGAAAGTAGAAAAAGAAATAAGTGTTGGGGTCTTGGGGCGATGCTTTTTCCCAAAATCTGATGGCTTGCATGTTCCCGACAATGTCTGGGTGTCAAATGGGCATGATGGCCTTTCCCTAATATGA 1014 0.4497 MERNSLSTGLKDHILNGTVTTNSNKNHMMKESWDCNNSQISSGGDEYINGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRQSPPTITDGRSHMPNLNLNPTSGPSFSTSPLSLLSSPSSSTMLRKPFSASTLPSLVSPTMSSSSSPPSASPSSELKKWVVDGILLNPSSAKASGSPKLKNAESLSRFGEYDDAFAQEDGCKVLQKAEVIRLDLEIGLLSDSKDDLDLELRLVNPVFHLFDDYLVHHIGHFENDAHIITVSCGHLLVYKPSQAAYSSGLRTNQREQTSSQKVEKEISVGVLGRCFFPKSDGLHVPDNVWVSNGHDGLSLI 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2350 337 Gene3D Classic Zinc Finger 54 100 - -
Dere03g2350 337 MobiDBLite consensus disorder prediction 92 121 - -
Dere03g2350 337 MobiDBLite consensus disorder prediction 142 161 - -
Dere03g2350 337 SUPERFAMILY beta-beta-alpha zinc fingers 55 84 IPR036236 -
Dere03g2350 337 PANTHER OS07G0101800 PROTEIN 31 241 - -
Dere03g2350 337 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Dere03g2350 337 MobiDBLite consensus disorder prediction 74 121 - -
Dere03g2350 337 MobiDBLite consensus disorder prediction 142 160 - -
Dere03g2350 337 SMART c2h2final6 58 80 IPR013087 -
Dere03g2350 337 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Dere03g2350 337 Pfam C2H2-type zinc finger 58 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2350 Dere-ChrDere03 36976922 36979727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2350 46 239 C2H2 Transcription Factor Family AT3G23130 43.939 3.07e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere03g2350 zf-C2H2_6 7.1e-07 CL0361