Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2347 ATGGATTCGCTGGAAGGTGGTAGTTGCTGGGATTTTCTCGATTACAACTTGATCGACCATTCTCCGCCGGCGCCCACCGATTTTCTTTGGTCCAACTCGAGTGTGAGCTCGGAAATTGACTTTTCAGTCGGTGCTGTTGCTTCTCAAGAGACCACCCGGAAGAGAGGTCGCACCAATTCATCCAGCAAGCCTGGAACAAAAGCATGTCGCGAGAAAATGCGGAGGGAGAAACTGAATGACAAATTTAATGAATTGAGCTCTGTTTTGGAGCCTGGGAGACCCGTGAAGACTGATAAACCAGCTATACTTGCTGATGCTGTCAGAATCTTGAATCAACTTAAAACTGAAGCTCAGGAACTGAAAGAAACAAATGAGAAGTTGTTGAATGAAATAAATTTGTTGAAGGCGGAGAAAAATGAACTTCGTGATGAGAAACTTGTTTTGAAAGCGGATAAAGAAAGGATTGAGACACAGTTAAAAGCTTTGCCCATTTCCCCTGCAGGGTTTATGCCTCCCCATGCAGCTGCATATCAAGCTGGGGTTAACAAAATGGCTGTCTTCCCAAGCTATGGTTATATTCCAATGTGGCAATATTTGCCTCCATCTGCCCGAGATACATCACAGGATCATGAACTCAGGCCTCCTGCTGCATAG 654 0.4511 MDSLEGGSCWDFLDYNLIDHSPPAPTDFLWSNSSVSSEIDFSVGAVASQETTRKRGRTNSSSKPGTKACREKMRREKLNDKFNELSSVLEPGRPVKTDKPAILADAVRILNQLKTEAQELKETNEKLLNEINLLKAEKNELRDEKLVLKADKERIETQLKALPISPAGFMPPHAAAYQAGVNKMAVFPSYGYIPMWQYLPPSARDTSQDHELRPPAA 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2347 217 PANTHER BHLH TRANSCRIPTION FACTOR 7 217 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Dere03g2347 217 Pfam Helix-loop-helix DNA-binding domain 66 113 IPR011598 GO:0046983
Dere03g2347 217 CDD bHLH_AtILR3_like 67 142 - -
Dere03g2347 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 127 IPR036638 GO:0046983
Dere03g2347 217 Coils Coil 103 158 - -
Dere03g2347 217 FunFam Transcription factor bHLH104 65 146 - -
Dere03g2347 217 SMART finulus 68 119 IPR011598 GO:0046983
Dere03g2347 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 62 113 IPR011598 GO:0046983
Dere03g2347 217 MobiDBLite consensus disorder prediction 46 66 - -
Dere03g2347 217 Gene3D - 66 162 IPR036638 GO:0046983
Dere03g2347 217 MobiDBLite consensus disorder prediction 46 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2347 Dere-ChrDere03 36948980 36951221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2347 42 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 63.934 1.02e-74 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere03g2347 HLH 8e-09 No_clan