Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2344 ATGGATCTTGCAAGCAGAAGATACTTGATTCATGGGTCTCAACCCCTTTCGCCATTTCCAAGTCCAGTGAGTTCGTTCATTCACCCACATTCGCATTCTGCCAGCACCAGTTTTCCCATTATAGCAATCGCTATAATAGGAATACTGGCCACAGCTTTCTTGCTCGTTAGCTACTATATCTTTGTCATCAAATGCTGCCTTAGTTGGCACCGTATAGATCTCCTAAGACGCTTCTCTCCTTCTCGGCGGCAAGAAGAGCCGCCGGCAACATACTCGCCGTCGGGAACAGAGCCTCGAGGACTCGACGAGGCGGTGATCCGATTAATCCCAGTGATCCAATACAAAACAGAGGGAAACAGAGACTCCGGAGAGCGAAGCTTCACTGAATGCTCTGTTTGCTTGAACGAGTTTCGCGAGAAGGAGAAGCTGAGGATTATACCGAATTGCAGCCATGTGTTCCATATAGATTGCATTGATGTGTGGCTTCAGAACAACGCCAATTGCCCACTTTGCAGAACCAGCATTTCTTTAACAAGCAGATTTCAAATCGATCAGATTCTTAATTCGAGACCCATTTCCCGAGATCGAAGGCCATATGGTGAAAATCTCGTAGGTGGGGATGAGGATTTTGTGGTGATTGAACTGGGTAATAATGACCATGATAGAGACCAGAACATAAACGGGACGCAAGAAAGAGAAAACTCATTGGAGGTAGCTTCTCGTACTGTGAGTCCTTCACCCAGGAAAATCATGGAGCAGAAGAAGAAAGCAAGGAAGCTTCAGAAAGTGACGAGCATGGGGGATGAATGTATTGATACTAGAGCGAAAGATGAGCAATTTTCAGTACAACCCATAAGGAGGTCTTTCTCCATGGATGCTTCAGGGGATAGACAGTTGTATTTGGCAGTCCAAGAAGCCTTGAAGAAACAGAACAGGCAAGAAGTCAATGAAGTATCGTCCTCCTCCATTGAAGGCTGTAGCAGTGGTAGAGCCAAGAGGTCATTCTTTTCCTTTGGACATGGTAGTAGTAGATCCAGAAGTTCAGTGCTACCTGTTTATTTGGACCACTAA 1071 0.4575 MDLASRRYLIHGSQPLSPFPSPVSSFIHPHSHSASTSFPIIAIAIIGILATAFLLVSYYIFVIKCCLSWHRIDLLRRFSPSRRQEEPPATYSPSGTEPRGLDEAVIRLIPVIQYKTEGNRDSGERSFTECSVCLNEFREKEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLTSRFQIDQILNSRPISRDRRPYGENLVGGDEDFVVIELGNNDHDRDQNINGTQERENSLEVASRTVSPSPRKIMEQKKKARKLQKVTSMGDECIDTRAKDEQFSVQPIRRSFSMDASGDRQLYLAVQEALKKQNRQEVNEVSSSSIEGCSSGRAKRSFFSFGHGSSRSRSSVLPVYLDH 356
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2344 356 SMART ring_2 130 171 IPR001841 -
Dere03g2344 356 PANTHER RING-H2 FINGER PROTEIN ATL16 22 352 IPR044600 GO:0016567|GO:0016740
Dere03g2344 356 Pfam Ring finger domain 129 172 IPR001841 -
Dere03g2344 356 MobiDBLite consensus disorder prediction 335 356 - -
Dere03g2344 356 SUPERFAMILY RING/U-box 129 178 - -
Dere03g2344 356 CDD RING-H2_EL5-like 129 172 - -
Dere03g2344 356 FunFam E3 ubiquitin-protein ligase ATL6 90 178 - -
Dere03g2344 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 177 IPR013083 -
Dere03g2344 356 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere03g2344 Dere-ChrDere03 36932698 36933768 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2344 27 355 C3H Transcription Factor Family AT1G04360 55.056 1.83e-108 320