Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2343 ATGCAAGCAAAGACAAATAATTCAACAAGGCCAACCATGGATGAAGAGGGGTCAAGAACAGGAAGGGCGAAGGACGCCGAAGGCGGCAGCGGGGACGTCCGGTACCGGGGAGTGAGGAGGCGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGGGACTCGACTAGGCAGGGGCAGAGAGTGTGGCTGGGGACATTTAACACGGCGGAGGAAGCGGCCAGAGCCTATGACAGAGCTGCGTACGCCATGAGAGGCCCATTTGCCATCCTCAACTTCCCAGATGAGTACCCACTTTCAGCTGGTGGTGCTAATACTACAGCCACCACTCATTCCTCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCAAGGAGTCATGAGCATGGCAAACAAGTGTTCGAGTTCGAGTACTTGGATGATAAATTGCTGGAGGAGCTTCTCGAATACGAGGAGAAAAAGAAGAAGGGAAAGTGA 486 0.5329 MQAKTNNSTRPTMDEEGSRTGRAKDAEGGSGDVRYRGVRRRPWGKFAAEIRDSTRQGQRVWLGTFNTAEEAARAYDRAAYAMRGPFAILNFPDEYPLSAGGANTTATTHSSASSSSSSSSSSSSSSSRSHEHGKQVFEFEYLDDKLLEELLEYEEKKKKGK 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2343 161 PANTHER DNA-BINDING DOMAIN 20 157 IPR044808 GO:0003700|GO:0009873
Dere03g2343 161 SMART rav1_2 34 98 IPR001471 GO:0003700|GO:0006355
Dere03g2343 161 MobiDBLite consensus disorder prediction 93 133 - -
Dere03g2343 161 MobiDBLite consensus disorder prediction 100 130 - -
Dere03g2343 161 ProSiteProfiles AP2/ERF domain profile. 34 92 IPR001471 GO:0003700|GO:0006355
Dere03g2343 161 MobiDBLite consensus disorder prediction 1 38 - -
Dere03g2343 161 FunFam Ethylene-responsive transcription factor 2 34 93 - -
Dere03g2343 161 CDD AP2 34 93 IPR001471 GO:0003700|GO:0006355
Dere03g2343 161 SUPERFAMILY DNA-binding domain 34 94 IPR016177 GO:0003677
Dere03g2343 161 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Dere03g2343 161 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Dere03g2343 161 Gene3D AP2/ERF domain 33 93 IPR036955 GO:0003700|GO:0006355
Dere03g2343 161 Pfam AP2 domain 34 84 IPR001471 GO:0003700|GO:0006355
Dere03g2343 161 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2343 Dere-ChrDere03 36905465 36905950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2343 34 158 AP2-EREBP Transcription Factor Family AT3G23230 62.400 4.95e-43 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere03g2343 AP2 2.3e-16 CL0081