Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2342 ATGGATGGGCACAAAGGGAGGCAAGAGAAGGCAAGGGAGGAGGTCCGGTACCGGGGCGTCCGGAGACGGCCATGGGGGAAGTACGCGGCGGAGATAAGAGATCCGTCGAAGCAAGGGGCGAGACTGTGGCTGGGGACGTTTGATACGGCGGAAGAAGCAGCAAGAGCATATGATAGGGCCGCCTTTAGCTTGAGGGGTCATCTTGCAATCCTTAATTTCCCCAATGAATACTATTCTCAAGTAAGGGGCTCCCCACCATATCCTCCCTATTTAGCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCATGCTCATGGAATTGGAAGCTCATCGTCTGGTTCGCTCCGGAGGCCAGTTTTTGAGATTGAGTGTTTGGATGAAAAGGTGTTGGAAGACCTGCTTGAATCCGAAGAGGAGAAAAAGAAAAGGATGGGAGATTGA 444 0.509 MDGHKGRQEKAREEVRYRGVRRRPWGKYAAEIRDPSKQGARLWLGTFDTAEEAARAYDRAAFSLRGHLAILNFPNEYYSQVRGSPPYPPYLASSSSSSSSSSSHAHGIGSSSSGSLRRPVFEIECLDEKVLEDLLESEEEKKKRMGD 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2342 147 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Dere03g2342 147 MobiDBLite consensus disorder prediction 89 115 - -
Dere03g2342 147 CDD AP2 16 75 IPR001471 GO:0003700|GO:0006355
Dere03g2342 147 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
Dere03g2342 147 Pfam AP2 domain 16 67 IPR001471 GO:0003700|GO:0006355
Dere03g2342 147 MobiDBLite consensus disorder prediction 84 115 - -
Dere03g2342 147 PANTHER DNA-BINDING DOMAIN 10 140 IPR044808 GO:0003700|GO:0009873
Dere03g2342 147 FunFam Ethylene-responsive transcription factor 2 15 75 - -
Dere03g2342 147 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Dere03g2342 147 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Dere03g2342 147 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Dere03g2342 147 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2342 Dere-ChrDere03 36890005 36890448 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2342 13 142 AP2-EREBP Transcription Factor Family AT3G23230 64.615 8.98e-50 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere03g2342 AP2 9e-17 CL0081