Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2319 ATGGTGAGAGCTCCTTGCTGTGAAAAGATGGGATTGAAGAAGGGTCCTTGGACCCCTGAGGAAGATCATCTCTTGATCTCCTATGTCCAGAAACATGGCCATGGCAATTGGCGTGCCCTCCCAAAGCAAGCAGGCCTTTTAAGATGTGGGAAAAGCTGCAGACTGCGCTGGATCAATTATTTGAGGCCGGATATAAAGAGAGGAAACTTCACCACTGAAGAAGAAGAAACTATCATTAAACTGCATGAGATGCTGGGCAACAGGTGGTCAGCAATTGCAGCAAAGTTACCAGGTAGAACAGACAACGAGATAAAAAATGTCTGGCATACCCACTTGAAGAAGAGGCTTCAGAAAACAAACCAACCCATTAATTCAAAGACCAAAATCAGAGGCTCCAAACCTGCAATTAAACGTTCTGATTCCAATTCCAGCACAGTGACAACTCAATCAGAACCAGCCAGTTTCATCAGTTTCCCTGAAAAGGACACTAATTCATCAGTTTCAGCATGCACTACTTCTTCCAGTGATTTCTCATCATCAGTACTCACAGTCGGAGAAAGCAAGAACATGGATATGTCTATCAAGAGTGAAGACATAGATTCTCTGGAGGAGATACTGCCTCAAATTGATGAAAGCTTTTGGTCAGAAGCAGCAATGGATGATAATAGCCCCATCACCAACAATGAATTACCAGTTCATCAATACTCATTGGATCCTATCGAATCATTCCAACAAGGTTATGGGTATAGTTCAAATTTTGACTACGAGATGGATTTCTGGTATGACATGTTCATCAGATCAGGGGATTCAATGGAGTTGCCTAAGTTCTGA 831 0.426 MVRAPCCEKMGLKKGPWTPEEDHLLISYVQKHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTTEEEETIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLQKTNQPINSKTKIRGSKPAIKRSDSNSSTVTTQSEPASFISFPEKDTNSSVSACTTSSSDFSSSVLTVGESKNMDMSIKSEDIDSLEEILPQIDESFWSEAAMDDNSPITNNELPVHQYSLDPIESFQQGYGYSSNFDYEMDFWYDMFIRSGDSMELPKF 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2319 276 CDD SANT 69 112 IPR001005 -
Dere03g2319 276 CDD SANT 16 61 IPR001005 -
Dere03g2319 276 MobiDBLite consensus disorder prediction 136 174 - -
Dere03g2319 276 FunFam Transcription factor MYB15 68 143 - -
Dere03g2319 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dere03g2319 276 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dere03g2319 276 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere03g2319 276 Gene3D - 68 142 - -
Dere03g2319 276 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 224 - -
Dere03g2319 276 MobiDBLite consensus disorder prediction 121 174 - -
Dere03g2319 276 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Dere03g2319 276 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dere03g2319 276 FunFam MYB-related transcription factor 13 66 - -
Dere03g2319 276 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere03g2319 276 SMART sant 66 114 IPR001005 -
Dere03g2319 276 SMART sant 13 63 IPR001005 -
Dere03g2319 276 Gene3D - 13 66 - -
Dere03g2319 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2319 Dere-ChrDere03 36539393 36540938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2319 1 276 MYB Transcription Factor Family AT2G31180 51.429 1.23e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere03g2319 Myb_DNA-binding 1e-16 CL0123