Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2306 ATGATCCGACCTGGGCAAGTTCCCCATTTTTGTCGCTTGAGCTTTGTCTTTGGCTGTTTCCTTACGAGATTGTCAGATGGAATGGCAGATCTTGCTAGTTATAGAAATATTGAGCAAGATGAAACAACATTGATTTGGATAACTCGAAGAGGGGAAAGGAATCTGAATTTGTCTTCCGTTTCGCATATTATCACTGGACAAAGAACTGCTGTCTTTAGAAGATATTCGTGCCCTGAAAAGGATTATTTGTCATTTTCTCTTCTGTATAAAAATGGTGAACGATCACTTGATCTGATCTGCAAGGATAAAGCTGAAGCAGATGTATGGTTTGCAGGCCTTCAGGCATTAATTTCTGCTGGACAGCGTCATAGGCATAGGCATAGGCATACTAGAAGTGACTTATCCAATGCTTTTCGTATATCTGGTCCTGGTAAAATTCTGCTAAGGATGTGGAATGTATTGTATTCTTTTGAATTTCAGCTACAAGGTAGACTTGACTTTATCCAGGATGATCGTCCTTTTGGTGCAACAATAGAGTATACTTCAAGCATTTCCAATGGTCGCGTTTCTATTGATTCACTTTCTCATGAATCTCCATTGAATTGGGCAAGCTCAGATGTGGGGTCAGAACGCATAACTATGCAACTACGGGCAAGCGCTGGAGATAATTTTCGTATTAGTGTGTCAAGTAGTCATAGTTGTTCAAGTACAGGATCTGGACCAGATGACTTAGAGTCACTTGGCGATGTCTATGTATGGGGAGAGCTTTGGGCAGATGGGGCTTCATCTGACGGGGGGAATCAGGTCTCTTCAAAGACAGATGTGTTGATGCCTAAGCTGTTAGAGTCAAATGTTGTTCTTGATGTTCAACAGATTGCATCGGGTGTTCGCCATATGGCTCTAGTTACAAGGCAAGGGGAGCTTTTTACTTGGGGAGATGAATCTGGGGGAAGACTTGGCCATGGGATTGATAAAGACTTTGGTCGCCCCCATCTTGTTGAGTTCCTAGCAGCTGCTAATGTGGAATTTGTTGCATGTGGAGAGTATCATACATGTGCTGTAACTACATCTGGTGATCTCTTCTCTTGGGGTGATGGTACTCACCAAGCCGGACTTCTTGGTCATGGAACTGATGTTAGTCACTGGATACCAAAGAGAATCACAGGCCCTTTAGAAGGACTTCAAGTTTTATCTGTTGCATGTGGCACATGGCATTCAGCATTGGCAACCTCCAATGGAAAATTGTTTACCTTTGGTGATGGAACATTTGGTGTCTTGGGCCATGGAGACCAAGAGAGCGTGTTATATCCAAAGGAGGTACAATCATTGAGCGGACTAAAGACTATTAAGGTTGCATGTGGAGTATGGCATACTGCAGCTATTGTAGAGGTTATGGGCCAGGCTGGTTCAAATGTTTTGTCCAAGAAGCTCTTCACCTGGGGTGATGGTGACAAATATCGTTTGGGTCATGGAAATAAGGAAACTTACCTTCAACCCACCTGTGTCTCTGCACTTATTGAATTCAATTTCCACCAGATAGCATGTGGCCACACTTTGACAGTTGCCCTCACTACATCAGGTCTTGTCTTCACTATGGGAGGCACTGCATATGGTCAACTAGGGAATCCTCTCTCTGATGGAAAAGCACCCATCTTAGTGCAAGATAAGTTGGTTGGTGAATTTGTTGAAGAAATAGCATGTGGAGAACATCATGTTGCTGCCTTGACGTCAAGAAGTGAGCTATATACTTGGGGAAAAGGTGCCAATGGAAGATTGGGACATGGAGACATAGAAGACCGGAAATCTCCAACATTGGTGGAAGGCTTGAAAGATAAGCATGTAAAATATATCTCATGTGGCTCAAACTTCACTTCTTGTATATGCATCCATAAATGGATGTCTGGAGTTGACCAGTCTGTTTGCTCTGGTTGTCGGCAAACATTTGGTTTCACTAGAAAAAGGCACAACTGTTATCATTGTGGATTGGTGCATTGTCATTCTTGTAGCTCCAAAAAGGCATTGAGAGCAGCATTAGCTCCAACACCAGGAAAACCTCATCGTGTGTGTGATGCATGTTATACAAAGCTTAAATCTGCTGAGGCTAGTAGTGCTTCCACTTTCAATAGAAGAGTTACCCCTCCCCGTCGATCATTAGATAGCAGGGAAAGAATAGAATGGGTAGAGGGAAGGCCTTCAAGGGTTCTCTTATCTCCCATCACGGAACCTGTAAAATACCTTGAGATAAAGACTAATAAGCAGGGAAATAAATATGATTCCTCTTCAATAGTCCGAGCTTCTCAAGTTCCATCACTTCTACAATTGAAAGATATTGCATTTCCCAGTTCATTGAGCGCCATTCAGAATGCTTTCAAGCCTGTTATACCTCCAAGTCCGCCTAGAACGCCACCTGCCAATTCGAGACCTTCATCACCATATGCAAGAAGACCCAGCCCACCACGTTCACCTACTCCTGGATTTTCTAGAAGTATTATAGACAGTTTGAGGAAGACAAATGAGATTTTGAACCAAGAGGTCTCAAAATTGCAAAAACAAATTCGAAGTTTAAAGCAGAGGAGTGAGATGCAAGATCGGGAGATACAAAAGCTTCTGAAAAATGTTGAGGATGTCAGCTCATTGGCTGGAGAGAAATCTTCCAAGCACAAAGTAGCAATAAAATTTATTCAGTCCATCACTGATCAGTTGAAGGAAACGACCAACAAGTTGAGGCCAGAGGTTTCTGACAGTGAAATATTGAAATCCTTGCATGAGCAAGCTGAAGATTTTCTAACAGAAAATACAGAATCTGAAACTTCTTCCTCTTTACCGTCAAGCTTAAAGTCTGAACAACAAAATGCAACTGATATAGCTGCTTCAGATGGTGACTCTTCTAAACCACAAGAACAAAAATTGGAAGAAAATGTAGATGCTGCTGGAGTCGAACCATCTCAAGATGGTGGAAATGTTCGTCAGGAAAGCAATGGGTCATCTGTATCTACTACAGGAGCAGCAGTGCCTCCACAAAGCTCAGAATATGGTTCAGGATCACCAAACTCTTCAAGGCCTAGGAGAGAAGGAGAAACAGAAACCATCGAACAATTTGCAGCCGGTGTTTATGTGACACTCATAGTCAGGCCCAGTGGTACTAAAATTTTCAAACGAGTTAGATTCAGTAAACGAAGGTTTGATGAACAACAAGCAGAAGAATGGTGGAGTAAAAACAAAGATAAGGTGCTTAGGAAATATAGTCCATGCGCCACAAATTCTGCAGCTACAGTATTACCTAGCACCCCACCACCACCTGCTGAAGAGAAGATTGAGGCATCACCTTCCTGA 3333 0.4257 MIRPGQVPHFCRLSFVFGCFLTRLSDGMADLASYRNIEQDETTLIWITRRGERNLNLSSVSHIITGQRTAVFRRYSCPEKDYLSFSLLYKNGERSLDLICKDKAEADVWFAGLQALISAGQRHRHRHRHTRSDLSNAFRISGPGKILLRMWNVLYSFEFQLQGRLDFIQDDRPFGATIEYTSSISNGRVSIDSLSHESPLNWASSDVGSERITMQLRASAGDNFRISVSSSHSCSSTGSGPDDLESLGDVYVWGELWADGASSDGGNQVSSKTDVLMPKLLESNVVLDVQQIASGVRHMALVTRQGELFTWGDESGGRLGHGIDKDFGRPHLVEFLAAANVEFVACGEYHTCAVTTSGDLFSWGDGTHQAGLLGHGTDVSHWIPKRITGPLEGLQVLSVACGTWHSALATSNGKLFTFGDGTFGVLGHGDQESVLYPKEVQSLSGLKTIKVACGVWHTAAIVEVMGQAGSNVLSKKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEFNFHQIACGHTLTVALTTSGLVFTMGGTAYGQLGNPLSDGKAPILVQDKLVGEFVEEIACGEHHVAALTSRSELYTWGKGANGRLGHGDIEDRKSPTLVEGLKDKHVKYISCGSNFTSCICIHKWMSGVDQSVCSGCRQTFGFTRKRHNCYHCGLVHCHSCSSKKALRAALAPTPGKPHRVCDACYTKLKSAEASSASTFNRRVTPPRRSLDSRERIEWVEGRPSRVLLSPITEPVKYLEIKTNKQGNKYDSSSIVRASQVPSLLQLKDIAFPSSLSAIQNAFKPVIPPSPPRTPPANSRPSSPYARRPSPPRSPTPGFSRSIIDSLRKTNEILNQEVSKLQKQIRSLKQRSEMQDREIQKLLKNVEDVSSLAGEKSSKHKVAIKFIQSITDQLKETTNKLRPEVSDSEILKSLHEQAEDFLTENTESETSSSLPSSLKSEQQNATDIAASDGDSSKPQEQKLEENVDAAGVEPSQDGGNVRQESNGSSVSTTGAAVPPQSSEYGSGSPNSSRPRREGETETIEQFAAGVYVTLIVRPSGTKIFKRVRFSKRRFDEQQAEEWWSKNKDKVLRKYSPCATNSAATVLPSTPPPPAEEKIEASPS 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2306 1110 Gene3D - 370 469 IPR009091 -
Dere03g2306 1110 Gene3D - 215 369 IPR009091 -
Dere03g2306 1110 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 53 892 - -
Dere03g2306 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 580 627 IPR000408 -
Dere03g2306 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 526 575 IPR000408 -
Dere03g2306 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 477 523 IPR000408 -
Dere03g2306 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 357 408 IPR000408 -
Dere03g2306 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 412 461 IPR000408 -
Dere03g2306 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 306 354 IPR000408 -
Dere03g2306 1110 SMART fyve_4 629 698 IPR000306 GO:0046872
Dere03g2306 1110 MobiDBLite consensus disorder prediction 1088 1110 - -
Dere03g2306 1110 SUPERFAMILY FYVE/PHD zinc finger 631 703 IPR011011 -
Dere03g2306 1110 Gene3D - 18 127 IPR011993 -
Dere03g2306 1110 MobiDBLite consensus disorder prediction 928 1029 - -
Dere03g2306 1110 MobiDBLite consensus disorder prediction 1093 1110 - -
Dere03g2306 1110 MobiDBLite consensus disorder prediction 931 963 - -
Dere03g2306 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 413 464 IPR000408 -
Dere03g2306 1110 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 451 461 IPR000408 -
Dere03g2306 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 358 412 IPR000408 -
Dere03g2306 1110 Pfam FYVE zinc finger 631 697 IPR000306 GO:0046872
Dere03g2306 1110 PRINTS Chromosome condensation regulator RCC1 signature 399 415 IPR000408 -
Dere03g2306 1110 PRINTS Chromosome condensation regulator RCC1 signature 516 534 IPR000408 -
Dere03g2306 1110 PRINTS Chromosome condensation regulator RCC1 signature 308 324 IPR000408 -
Dere03g2306 1110 PRINTS Chromosome condensation regulator RCC1 signature 358 374 IPR000408 -
Dere03g2306 1110 PRINTS Chromosome condensation regulator RCC1 signature 574 595 IPR000408 -
Dere03g2306 1110 PRINTS Chromosome condensation regulator RCC1 signature 415 429 IPR000408 -
Dere03g2306 1110 CDD FYVE_like_SF 641 693 - -
Dere03g2306 1110 SUPERFAMILY RCC1/BLIP-II 247 632 IPR009091 -
Dere03g2306 1110 MobiDBLite consensus disorder prediction 985 1020 - -
Dere03g2306 1110 SUPERFAMILY PH domain-like 39 117 - -
Dere03g2306 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 306 357 IPR000408 -
Dere03g2306 1110 MobiDBLite consensus disorder prediction 790 829 - -
Dere03g2306 1110 Gene3D - 470 642 IPR009091 -
Dere03g2306 1110 Coils Coil 831 872 - -
Dere03g2306 1110 Pfam Transcription factor regulating root and shoot growth via Pin3 1026 1081 IPR013591 -
Dere03g2306 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 475 526 IPR000408 -
Dere03g2306 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 579 630 IPR000408 -
Dere03g2306 1110 FunFam PH, RCC1 and FYVE domains-containing protein 1 219 466 - -
Dere03g2306 1110 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 643 704 IPR013083 -
Dere03g2306 1110 ProSiteProfiles BRX domain profile. 1027 1082 IPR013591 -
Dere03g2306 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 527 578 IPR000408 -
Dere03g2306 1110 MobiDBLite consensus disorder prediction 792 806 - -
Dere03g2306 1110 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 635 697 IPR017455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2306 Dere-ChrDere03 36400708 36407483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2306 1024 1095 Major Intrinsic Protein MIP AT1G31880 36.111 4.07e-09 58.2