Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2301 ATGGATCACGTTATTGGCGGAAAATTCAAGCTTGGGCGGAAGATTGGCAGTGGATCGTTCGGCGAGCTATATTTTGGCGTTAATGTGCAAAATGGAGAGGAAGTGGGTGTCAAGCTGGAACCTGTGAAGACCAAGCATCCTCAACTTCACTATGAGTCAAAATTATATATGCTTCTTCAAGGAGGAACTGGTATACCCCATTTGAAATGGTTTGGAGTTGAGGGTGATTACAATGTCATGGTTATTGACCTTCTTGGCCCAAGTCTAGAAGACCTGTTTAACTACTGCAATAGGAAATTCTCTCTGAAAACAGTTCTGATGCTGGCAGATCAGCTAATAAACAGAGTTGAATACATGCACTCGCGAGGTTTTCTTCACCGTGACATAAAGCCTGATAACTTTCTAATGGGTTTAGGCCGCAAAGCAAACCAGGTATACATAATTGATTATGGCCTTGCAAAAAAGTATCGGGATCTCCAAACACATAAGCACATACCGTACAGGGAAAACAAGAATCTCACCGGAACTGCTCGGTATGCAAGTGTTAACACTCACCTTGGAGTTGAACAGAGCCGAAGAGATGATCTAGAATCACTTGGTTATGTGCTCATGTACTTCTTGAGAGGAAGTCTCCCTTGGCAAGGCTTGAAAGCTGGCACTAAAAAGCAGAAATATGACAAGATCAGTGAAAAGAAGATGCTTACTCCTATAGAGGTCCTTTGCAAGTCTTATCCGTCAGAGTTTACATCGTATTTCCACTACTGCCGATCATTGCGGTTCGAAGACAAACCTGATTATGCTTACCTAAAGAGACTCTTTCGGGACCTATTCATTAGAGAAGGTTATCAGTTCGATTATGTATTTGATTGGACTATATTAAAGTATCCACAAATTGGATCAAGTTCCAGATCACGGCCAAATGGGAAACAAGTTATAAACCAAGGACCATCTGCAGAGAGATTAGAAAGGCCTTCAGTTGGACAAGAGACTCGGGAAAGATTTTCAGGTTCTGTTGAGGCATTTGCTAGAAGAAATGGCTCTGGTCTGCTTAGTGATCACTCTAGGCACAGGTCTTCAGAGGGTGTGCCATCTTCAAAAGTAGTGCATCCTGATTCTGAGAGGGCTCGTAGTTCTTCTCGTACTGGCAGTGCTTCAAAAAGGCCTGTCATGTCAAGCAGCCGGCCAAGCTCCTCTGGTGAGCCCAGTGAAAGCCGTTCTAGCCGATTGGTCTCAAGCAGTGGCCGTCTTTCTACAACTCAAAGGATTCAGCCTGGTTTTGAGTCCAAATCATCATCATTTACCCGTGCTGCAGCATCAAGAGGTGGTCGTGATGATACACTAAGGAGTTTTGAGTTTCTGTCAATTGGCACAGGGAAAAGGAAATGA 1386 0.4372 MDHVIGGKFKLGRKIGSGSFGELYFGVNVQNGEEVGVKLEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFEDKPDYAYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRSRPNGKQVINQGPSAERLERPSVGQETRERFSGSVEAFARRNGSGLLSDHSRHRSSEGVPSSKVVHPDSERARSSSRTGSASKRPVMSSSRPSSSGEPSESRSSRLVSSSGRLSTTQRIQPGFESKSSSFTRAAASRGGRDDTLRSFEFLSIGTGKRK 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2301 461 SMART serkin_6 9 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g2301 461 CDD STKc_CK1_delta_epsilon 8 282 - -
Dere03g2301 461 MobiDBLite consensus disorder prediction 300 461 - -
Dere03g2301 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Dere03g2301 461 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g2301 461 Pfam Protein kinase domain 10 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g2301 461 MobiDBLite consensus disorder prediction 300 314 - -
Dere03g2301 461 FunFam Casein kinase 1-like protein 1 329 - -
Dere03g2301 461 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Dere03g2301 461 PANTHER CASEIN KINASE-RELATED 9 382 - -
Dere03g2301 461 MobiDBLite consensus disorder prediction 349 376 - -
Dere03g2301 461 FunFam Putative Casein kinase I 1 85 - -
Dere03g2301 461 Gene3D Transferase(Phosphotransferase) domain 1 1 338 - -
Dere03g2301 461 MobiDBLite consensus disorder prediction 377 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2301 Dere-ChrDere03 36317259 36323299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2301 8 213 MAP Kinase Kinase Kinase AT3G06030 25.000 2.95e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Dere03g2301 Pkinase 1.3e-24 CL0016