Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere03g2269 | ATGGATTCGGATCAAGGGAAGCTTTTTATTGGTGGGATATCGTGGGATACGACGGAGGACAAGCTGAAGGAGCATTTCAGCAACTATGGTGATGTTTTGCACACTTCTGTTATGAGGGAGAAGAACACTGGGAAGCCCAGAGGTTTTGGATTCGTGGTGTTTGCAGATCCTTCGATTCTCGATAGGGTTCTCGAGGACAAGCATGTAATCGATGGAAGAACGGTAGATGCCAAGAAGGCCTTCTCCAGAGAGGATCAACAAATCTCTGCTACTTCCAGGGCTGGAAATCCCAACTCGTATAGAAATTCTGGGAATGGTGGAAATATCAGGACCAAAAAAATATTTGTTGGAGGGTTGCCTCCTTCCTTGACTGAAGAAAAGTTTCGTCAGTACTTTGAGGCTTATGGCAATGTTACAGATGTAGTAGTCATGTATGATCAGAATACTGGACGGCCAAGAGGATTTGGGTTTATTTCATTCGACACTGAAGATGCAGTTGATAGGGTTTTGCATAAGCCATTTCATGATTTAAGTGGTAAGCAAGTAGAAGTAAAGCGTGCACTTCCAAAGGATGCTAATCCTGGTGCAAGCGGTCGTACTATGGGTGGTGTGGGAGCTGGTGGTGGTTATCAGGGGTATGGGGCATCTGGTGGCAACCAAAATGCTTATGATGGTCGGATGGATTCTGGTAGGTATATGCAGCCTCAGAGCACTGGGGCTGGATTTCCACCTTATGGTTCTTCTGGGTATAGCACTCCTGGGTACGGGTATGGTCCTGCTAATAATGGCATTGGTTATGGTGGATATGGGAGTTATGGTGGCGCAACCACTGGGTATGGCGGACCTGCTGGCGCAACCTATGGGAATCCAAATGTCCCTAATGCTGCATATGCTGGTGGACCACCAGGTGCTCCAAGGAGTTCATGGGCTGCTCAAGCTCCCTCTGGTTATGGTTCTATGGGCTATGGGAATACTGCTGCTTGGGGTGCTCCAGGTGGCGGTGCTGGATCTGGTGGTGCTGGTCCTGGTTCAGCACCTGCAGGTCAATCACCTAGTGGAGCTGCTGGTTATGGGAATCAAGGTTATGGTTATGGTGGGTATGGTGGATATGGTGGGAGTGATAGTTCTTATGGGAACCCTGGTGTATATGGTGCTGTTGGAGGGCGTTCTGGGGGTGCCCAAAACAACAATGCTAGTGGTCCAGGAGGGAATGAACTGCAAGGTAGTGGTGGCAGCTACAATGGAAGTGGCTATGGTGATGCAAATGGAAGTTCAGGATATGGAAATGCAGCATGGAGATCTGAACCTGCACAAGCATCTGGAAATTATGGGAATCCTCAGGGAAATGCTCATGGCGGACAAGTCGGGTATGGCGGTGGCTATGGCGGTGCTCAGTCCAGACAGGCCCAACAGCAGTAA | 1419 | 0.4912 | MDSDQGKLFIGGISWDTTEDKLKEHFSNYGDVLHTSVMREKNTGKPRGFGFVVFADPSILDRVLEDKHVIDGRTVDAKKAFSREDQQISATSRAGNPNSYRNSGNGGNIRTKKIFVGGLPPSLTEEKFRQYFEAYGNVTDVVVMYDQNTGRPRGFGFISFDTEDAVDRVLHKPFHDLSGKQVEVKRALPKDANPGASGRTMGGVGAGGGYQGYGASGGNQNAYDGRMDSGRYMQPQSTGAGFPPYGSSGYSTPGYGYGPANNGIGYGGYGSYGGATTGYGGPAGATYGNPNVPNAAYAGGPPGAPRSSWAAQAPSGYGSMGYGNTAAWGAPGGGAGSGGAGPGSAPAGQSPSGAAGYGNQGYGYGGYGGYGGSDSSYGNPGVYGAVGGRSGGAQNNNASGPGGNELQGSGGSYNGSGYGDANGSSGYGNAAWRSEPAQASGNYGNPQGNAHGGQVGYGGGYGGAQSRQAQQQ | 472 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere03g2269 | 472 | CDD | RRM2_Hrp1p | 113 | 190 | - | - | |
| Dere03g2269 | 472 | MobiDBLite | consensus disorder prediction | 393 | 472 | - | - | |
| Dere03g2269 | 472 | CDD | RRM1_hnRNPA_hnRNPD_like | 8 | 78 | - | - | |
| Dere03g2269 | 472 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 109 | IPR035979 | GO:0003676 | |
| Dere03g2269 | 472 | MobiDBLite | consensus disorder prediction | 84 | 107 | - | - | |
| Dere03g2269 | 472 | MobiDBLite | consensus disorder prediction | 81 | 107 | - | - | |
| Dere03g2269 | 472 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 82 | IPR000504 | GO:0003723 | |
| Dere03g2269 | 472 | MobiDBLite | consensus disorder prediction | 393 | 449 | - | - | |
| Dere03g2269 | 472 | Gene3D | - | 1 | 92 | IPR012677 | - | |
| Dere03g2269 | 472 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 112 | 189 | IPR000504 | GO:0003723 | |
| Dere03g2269 | 472 | SUPERFAMILY | RNA-binding domain, RBD | 110 | 219 | IPR035979 | GO:0003676 | |
| Dere03g2269 | 472 | Gene3D | - | 108 | 232 | IPR012677 | - | |
| Dere03g2269 | 472 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 75 | IPR000504 | GO:0003723 | |
| Dere03g2269 | 472 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 114 | 171 | IPR000504 | GO:0003723 | |
| Dere03g2269 | 472 | SMART | rrm1_1 | 113 | 185 | IPR000504 | GO:0003723 | |
| Dere03g2269 | 472 | SMART | rrm1_1 | 7 | 78 | IPR000504 | GO:0003723 | |
| Dere03g2269 | 472 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 5 | 87 | - | - | |
| Dere03g2269 | 472 | FunFam | heterogeneous nuclear ribonucleoprotein 1 | 107 | 226 | - | - | |
| Dere03g2269 | 472 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 | 1 | 472 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere03g2269 | Dere-ChrDere03 | 35934492 | 35936830 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere03g2269 | 8 | 200 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 23.558 | 7.59e-08 | 53.1 |