Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2260 ATGACCCATCCACGTGGACCGACCCGGCTAGGCAAATCTTGGCTCGCCGTGAAGGTCGCGTTGACGCCTCGCGAGATGTTGCAGGATGTAATCCACGCCCCACCGCCACCTCAGGCGGAGCAACTTACCAATATTATTTCGGAAGCCATTTTGTTCACAATGCTTTTATATCACTTGCTGCAGGACGAAATCTCAAGCCCGATTAGTGCTCGAATTTTCGAGCTCTGTGACTCTGAATTGTTCCCGGAGACCCTGCAGAATTCTGAGGTTACCTCCAGCTCAAACTGTTGCTATGATGAGAACTCCTCCTATGCCACAAATATATCTCTAGCTTTAGATGTAGACAATAAGTTCAACAATAGCAACAGCAATAGCAATACAATCACCGCCCCAGCTAGCACAACTGCGAATAGCACCACTGTCACCGCCGCCACCACCACCACCACCACGAACAACAATACGACCAACAGTAGCAATCTGTCCCTTATCTTTGACTCCCAGGATGAAATTGATAATGACATTTCTGCCTCCATAGACTTCTCATCATCTTCTGCTTTCCCTATTTCTTCATATCTCCCAGTCACGACTCAACAGGAACAATTTGACTTCTCTTCACTGCAGCCACAGGTCACACTGGCAGCGAGTTCAGTTGTGGAAGGCCTCACACAATATCCCACTGACTCTGCTGTTGCACCTCTTATGGGGGCTCCATTAGCATCAGTTTTTGATGAGGATTGCCTATCTTCTGTTCCTTCTTATGTGCCTTTGAACCCTTCATCTCCTTCTTGCTCTTATCTCAACCCTGGCATAGGACCTTACATGCCACTTGGTCCCATTAGTACTGCCTTATCTGCTGATAGTTCTGGGATATTTGGTGGGAGCATTCTTCTGGGTTCTGAACTGCAAACACAAGAACTGGATTTCCAGGGAGAAAATGGTGGAATTTATTGTCCAGATTCAATTCAGCGGGTGTTTAACCCTCCAGACCTCCAGGCACTTGGTGCTGAGAGTCAGCAACTGGTTGCTGGGGCTGGGAGTTCCACCACTTTGACACCAGAAATATCAAACTTGGAGGATTCTACCTTCAAGGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAAAAGATTCATAGATACATGAAGAAAAGGAATGAGAGAAACTTCAGCAAGAAAATCAAGTATGCCTGTCGCAAAACTCTGGCAGATAGCCGGCCACGGGTTAGAGGAAGGTTTGCGAAGAATGACGATTTTGGAGATACTCATAGACCTGCTAGTAGCAATCATGAAGAAGATGATGAAGAAGACGTAGTTGTGAAGGAAGAAGATGATATGGTTGATTCGTCAGATATCTTTGCTCATATCAGTGGGGTGAACTCCTTCAAATGCAACTATTCCATCCAGTCCTGGATTTGA 1413 0.4607 MTHPRGPTRLGKSWLAVKVALTPREMLQDVIHAPPPPQAEQLTNIISEAILFTMLLYHLLQDEISSPISARIFELCDSELFPETLQNSEVTSSSNCCYDENSSYATNISLALDVDNKFNNSNSNSNTITAPASTTANSTTVTAATTTTTTNNNTTNSSNLSLIFDSQDEIDNDISASIDFSSSSAFPISSYLPVTTQQEQFDFSSLQPQVTLAASSVVEGLTQYPTDSAVAPLMGAPLASVFDEDCLSSVPSYVPLNPSSPSCSYLNPGIGPYMPLGPISTALSADSSGIFGGSILLGSELQTQELDFQGENGGIYCPDSIQRVFNPPDLQALGAESQQLVAGAGSSTTLTPEISNLEDSTFKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGDTHRPASSNHEEDDEEDVVVKEEDDMVDSSDIFAHISGVNSFKCNYSIQSWI 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2260 470 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 89 431 IPR045281 GO:0009909
Dere03g2260 470 MobiDBLite consensus disorder prediction 410 436 - -
Dere03g2260 470 ProSiteProfiles CCT domain profile. 372 414 IPR010402 GO:0005515
Dere03g2260 470 MobiDBLite consensus disorder prediction 410 429 - -
Dere03g2260 470 Pfam CCT motif 372 414 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2260 Dere-ChrDere03 35855306 35859502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2260 372 430 C2C2-CO-like Transcription Factor Family AT5G57660 46.875 2.53e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere03g2260 CCT 6.4e-19 CL0281