Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2259 ATGAAGCAAGGTCATTTACTTGAACAGGTAGAAAGGCAGTTCCGTTTATCTGCACCAAATGCCACTACAGCAAATGCTTCTGCCCTGAGCAATGAAAAAAGAGCTGCTGGGGATGGGGATCTGGCCCCTGGTGGAAAGAAATTATGGCCTGGGATAACATCACATGTAATTTCTGAGCTAACTGAGTGTAATGCTGCTCTCTCGCAGCAGAGGAAAAAACGGCTGATTCCCGCAGCTTTGGCTCCTATTGATCCTTTGGAGGGATATACCCAGATATCTAGTCACCCCTTTCACAAAACAAGCAAACCAGGAATTGTATCTCTTGATATTCTTTATTCTAATCACATAATTGCAACTGGAGGGGTTGATACAAATAGTGTGATTTTTGACCGACCATCTGGGCAGATTATAAGCACACTCAATGGTCTCTCAGAAAAGGTTACCAGTGTAGAGTTTATAGTTCAGGGCGACATGTTCTTAACTAGTTCAGCGGACAAGATTCTGCAGACCCTGTTGGGCACAATATCCATTCGTGCCTGGTGCTTGTTTGCTTCAAAGTCCAAACACTTGACTTTTGGCCCAACTTTGCAAAACCAAGCCTGTAAAGTTACAGTTCGGTTGTGGCAAGGGTCAGATGAAGGTAACTATAACTGCAGACACATCTTGAGGGATCATAGAGCTGAGGTGCAAGCTGTCACTGTCCATGCCACCAATAACTACTTTGTTACTGCTTCCCTTGACAATACATGGTGCTTTTATGAACTTTTCTCTGAAACCTGTCTTACTCAGGTTTCAGACTCTTCAGGTTCATCTGGAGGCTGTACATCTGCAGCTTTTCATCCAAACGGTCTTATTCTTGGAACAGGCACTGCAGAAGCTCTAGCTAAAATCTGGGATGTGAAGAGTGAGGCAAACGTTGCTAGATTTGATGGACATAAAGGGGCAGTAACTGCAATATCCTCTTCTGAGAATGGTTACTTCCTTGCGACTACAGCTCACGATGGTGTAAAGCTTTGGGATCTACGCAAGTTGAAAAATTTCCGGAATTTCAGTCTATATGGCCAAGACACACCAACAAACTCGGTGGGGTTCGATCATAGTGGATCTTACCTCGCAATTGCTGGCTCTGATATAAGAGCTCCTCTCTCAAGTGCATTTAAAGTGATGAAGGTGGGGCATAGGCCCCTGGATCCCCTGCATTACCTAAATGCAAGGAATCCGCATTTGGGGCTTAGCCCTCTGCTTCCTCTCTCTCTCGACATGCGCAGACATGCGCATTGTGAGTGTGACTGTTCTATCAGTTCATTGTATCTCTCCATGGCTGATGATAAGTCTTAG 1338 0.4484 MKQGHLLEQVERQFRLSAPNATTANASALSNEKRAAGDGDLAPGGKKLWPGITSHVISELTECNAALSQQRKKRLIPAALAPIDPLEGYTQISSHPFHKTSKPGIVSLDILYSNHIIATGGVDTNSVIFDRPSGQIISTLNGLSEKVTSVEFIVQGDMFLTSSADKILQTLLGTISIRAWCLFASKSKHLTFGPTLQNQACKVTVRLWQGSDEGNYNCRHILRDHRAEVQAVTVHATNNYFVTASLDNTWCFYELFSETCLTQVSDSSGSSGGCTSAAFHPNGLILGTGTAEALAKIWDVKSEANVARFDGHKGAVTAISSSENGYFLATTAHDGVKLWDLRKLKNFRNFSLYGQDTPTNSVGFDHSGSYLAIAGSDIRAPLSSAFKVMKVGHRPLDPLHYLNARNPHLGLSPLLPLSLDMRRHAHCECDCSISSLYLSMADDKS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2259 445 PANTHER PRE-MRNA-PROCESSING FACTOR 19 204 379 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Dere03g2259 445 Gene3D - 84 394 IPR015943 GO:0005515
Dere03g2259 445 SUPERFAMILY WD40 repeat-like 101 377 IPR036322 GO:0005515
Dere03g2259 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 309 349 IPR001680 GO:0005515
Dere03g2259 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 308 IPR001680 GO:0005515
Dere03g2259 445 Pfam WD domain, G-beta repeat 305 340 IPR001680 GO:0005515
Dere03g2259 445 SMART WD40_4 88 130 IPR001680 GO:0005515
Dere03g2259 445 SMART WD40_4 215 254 IPR001680 GO:0005515
Dere03g2259 445 SMART WD40_4 133 181 IPR001680 GO:0005515
Dere03g2259 445 SMART WD40_4 257 299 IPR001680 GO:0005515
Dere03g2259 445 SMART WD40_4 302 340 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2259 Dere-ChrDere03 35830150 35837361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2259 5 387 U-box Gene Family AT1G04510 57.031 3.44e-145 422