Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2250 ATGGCAGCTTCTGCAGCTGCAGCCATAGGCTCCTCCTTCTCTTCCTCCATCAATACTCTCAAGTGTCTCCGTTCTTCCAAGAACTTGTCCTTTGAACCTCTCCTCAGAATTTCATCAATCCGCGTGTTAGCGTCTGTGTCACAATCGCACCTTGTGGAATCCCCCTCTGTTGGTACCAATTTGCACAAGTTGTGGGTGCCTAGAGTTTCTGCGCAAGAAGAGCTTGCAGTGGCCGATGAGACTGATGCTGGTTTAGTTGAAGAGAGTGAGGGGAAAGGAGAGGAAGTGGTAGATGAAGGAGAGGCTGAAGTCTCTGTCAACACTAAGCTTTATTTTGGGAATTTGCCTTACAGTGTTGACAGTGCACAACTTGCAGGGATTATTCAGGAATTTGGCAGCCCAGAACTCATTGAGGTTCTTTACCACAGGGAAACTGGAAAAAGCAGAGGTTTTGCATTTGTGACAATGAGTAGTATCGAAGATTGTGATGCAGTAATAGAAAATCTTGATGGAATGGAATTCTTGGGTCGAACCCTGCGGGTGAACTACTCTGACAAACCTAAACCAAAAGAACCCTTGTACCCTGAAACTGAACATAAGCTTTTTGTTGGGAACTTGTCATGGTCAGTAACTTCTGAGAGTCTGACACAAGCTTTTCAAGAATATGGAAAAGTGGTAGGAGCACGAGTCTTATATGACGGGGAAACAGGAAGGTCTCGTGGTTATGGTTTTGTTTGCTACTCAACCAGATCAGAAATGGAAGCTGCACTTGCATCCTTGAATGGAGTGGAACTAGAAGGAAGGGCAATGCGTGTAAGCTTGGCCCAAGGCAAACAATCACAAAGTGAATAG 852 0.4531 MAASAAAAIGSSFSSSINTLKCLRSSKNLSFEPLLRISSIRVLASVSQSHLVESPSVGTNLHKLWVPRVSAQEELAVADETDAGLVEESEGKGEEVVDEGEAEVSVNTKLYFGNLPYSVDSAQLAGIIQEFGSPELIEVLYHRETGKSRGFAFVTMSSIEDCDAVIENLDGMEFLGRTLRVNYSDKPKPKEPLYPETEHKLFVGNLSWSVTSESLTQAFQEYGKVVGARVLYDGETGRSRGYGFVCYSTRSEMEAALASLNGVELEGRAMRVSLAQGKQSQSE 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2250 283 Gene3D - 190 283 IPR012677 -
Dere03g2250 283 FunFam 31 kDa ribonucleoprotein, chloroplastic 71 189 - -
Dere03g2250 283 FunFam 28 kDa ribonucleoprotein, chloroplastic 190 281 - -
Dere03g2250 283 SUPERFAMILY RNA-binding domain, RBD 107 190 IPR035979 GO:0003676
Dere03g2250 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 270 IPR000504 GO:0003723
Dere03g2250 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 180 IPR000504 GO:0003723
Dere03g2250 283 PANTHER OS02G0815200 PROTEIN 45 278 - -
Dere03g2250 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Dere03g2250 283 CDD RRM2_NsCP33_like 200 275 - -
Dere03g2250 283 Gene3D - 68 189 IPR012677 -
Dere03g2250 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 277 IPR000504 GO:0003723
Dere03g2250 283 SMART rrm1_1 109 182 IPR000504 GO:0003723
Dere03g2250 283 SMART rrm1_1 200 273 IPR000504 GO:0003723
Dere03g2250 283 SUPERFAMILY RNA-binding domain, RBD 194 280 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2250 Dere-ChrDere03 35769238 35771016 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2250 108 281 Eukaryotic Initiation Factors Gene Family AT2G36660 29.255 3.13e-18 82.8