Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2246 ATGACGCTGGGTTTACTAGGTGGTGGTGGTAATGGTGGTTCTTCCGGGGCTTTCCCAAATGAGCCCAACGTGTCAAATGCCAAGGTTCTGGGTCAAGAATGCTCATTTTCGTACAAAGGTGAGGCTGAACTTGAATTGGGTTTGGGTCTGAGCCTTGGTGGTGGCGGGGTTGGGAAGGCTAAGCCTTGTTCTGCATGGGGTGAGTGTGGCCGTATTTTGACGGCTAAAGACTTCCCTTCTGGAGTCTCTCATGGACCTTCTGTTGCTGCTTCTCGTTTCTCAGATAGAGTCAGTACTGTGGTTGGTTCTGTTTCTGGGACTAAGAGAGCTGCTGACTCTGTCTCTCATGACGCTGGATCTCCTACTGCTGGCAGTCAGGTTGTTGGATGGCCACCCATCAGGTCATATAGGATGAACAGCTTGATTAACCAAGCGAAGGCCCAGAGGGCCGAAGAAGACAAATCCGGCGAGGAGAGAAATAGTCCCAATGATGCTTCTGTTACCAAAATCAACGCTGGCACTGTGACAGAAAAAAACCATCTTGGATTTGTGAAGGTGAATATGGATGGAATCCGCATAGGGAGAAAGGTAGACTTGAATTCTCATTCAAGCTATGAGACTTTAGCTCAAACACTGGAAGACATGTTTTTCAGGCCTGCTACAGCTACTAATCCAACTGCAGGTGGTGAGAAAGAACCGGCAACAAAACCCTCCAAGCTTTTGGATGAAACATCTGAATTTGTGCTCACTTATGAAGATAAAGAGGGTGATTGGATGCTTGTGGGTGATGTTCCCTGGAGGATGTTTATCAGCTCAGTGAGAAGGCTCCGAATCATGAGAACATCTGAGGCCAGTGGACTTGCTCCAAGATATCAAGAGAAAAATGACAGACTAAGAATTAAACCCATTTAG 912 0.4715 MTLGLLGGGGNGGSSGAFPNEPNVSNAKVLGQECSFSYKGEAELELGLGLSLGGGGVGKAKPCSAWGECGRILTAKDFPSGVSHGPSVAASRFSDRVSTVVGSVSGTKRAADSVSHDAGSPTAGSQVVGWPPIRSYRMNSLINQAKAQRAEEDKSGEERNSPNDASVTKINAGTVTEKNHLGFVKVNMDGIRIGRKVDLNSHSSYETLAQTLEDMFFRPATATNPTAGGEKEPATKPSKLLDETSEFVLTYEDKEGDWMLVGDVPWRMFISSVRRLRIMRTSEASGLAPRYQEKNDRLRIKPI 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2246 303 Gene3D - 176 293 - -
Dere03g2246 303 MobiDBLite consensus disorder prediction 1 20 - -
Dere03g2246 303 MobiDBLite consensus disorder prediction 106 129 - -
Dere03g2246 303 MobiDBLite consensus disorder prediction 220 239 - -
Dere03g2246 303 Pfam AUX/IAA family 90 290 IPR033389 -
Dere03g2246 303 MobiDBLite consensus disorder prediction 144 171 - -
Dere03g2246 303 ProSiteProfiles PB1 domain profile. 181 283 IPR000270 GO:0005515
Dere03g2246 303 FunFam Auxin-responsive protein 176 291 - -
Dere03g2246 303 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 43 286 IPR003311 GO:0005634|GO:0006355
Dere03g2246 303 SUPERFAMILY CAD & PB1 domains 183 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2246 Dere-ChrDere03 35742870 35745224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2246 142 301 B3 DNA Binding Superfamily AT1G59750 29.814 3.28e-13 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere03g2246 AUX_IAA 2.8e-64 CL0072