Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2230 ATGGATTCTGTTGCACCATTTCAAGACCTTAATCACTTTCCTGACGTACCCGCCAGTATACCCAGTAGCAGTACTGACCCCGTCAATGGCGTCACCACTACCCCTAATATTTTGTTGGTCCCGAAACTGGAACCGAAGCTGGAGCCGTTGGACGAGCCGTTTCTGAACCATCGTCCACAAGAACCCCAAGAAATCGAGCAGGCCATGTTTTCGAATCATGCCTTGGATGGGCTGTCTGAGTCACAGCACACTAATTTCTGTGAGAAGAACCTTGCTTTCGTTGAAACCCAAGGCGAATCGAATGAACAAGACAATGTGTACGCGGAGTTCTATCGAATTTCTGAGCAGTTTAGGAGTGCCTTTGCTAAGAGGTTAAAGCGAATGGGAGATGTCGAAGTTTTGGACCCAGATTCGCGGGCAATTGTTCCTGTGCCAGAGGAAAACCAGGTTCCTGCGGTCGTCGTTAGTCCGAGACGGACCCCGCGCCGGAAGGAGCTGGTGAGGGTCACTGATCTTCGAATTGAAGATGAAAGGTATTTCCGCGACATTATAAGAAGGACCAGGATGATCTATGATTCATTGCGCGTTCTGACAACGGTGGAGGAGGAGAAGCGATGCGATTTGGCAAACAATAAACGGCTGCGAGGTGATTTGAGGGCTGCCTCGTTGATGAGGGATCGTGGCTTGTGGCTTAATCGCGATAAAAGGATAGTGGGTTCGATTCCAGGGATTTACATTGGCGATATGTTCTTTTTTAGGATGGAACTAGTGGTGGTTGGGTTGCACGGTCAACCACAAGCTGGAATTGACTATCTTCCTTCTAGCCAGAGTACAAATGGGGAGCCGATAGCAACCAGCGTGATAGTTTCTGGTGGATATGAGGATGATGAAGATGGTGGCGATGTGATAATCTACACGGGCCATGGAGGGCAAGATAAGAAGAATTCAAGGCAAGTTGTTCACCAGAAGTTAGAAGGAGGAAATCGTGCTATGGAAAGAAGCATGCATTATGGGATTGAAGTGCGGGTTATTCGAGGGTTCAGATATGAGGGAGGTGTTTCTAGTAAAATTTACGTTTATGATGGCTTGTATAGAATTGTTCAATGCTGGTTTGATGTGGGTAAATCTGGATTTGGAGTTTACAAGTATAAGCTTGTCAGAATTGAGGGCCAACCTGAGATGGGTAGTGCTATTCTTAGGCTTGCTCAGACTCTTAGGACCAATCCATTGTCTATCAAGCCCATGGCTTATCTTAGTCTTGATATTTCTAACAAAAAGGAGAATGTTCCTGTTCGTCTTTTTAATGACATAGATAGGGATCATGACCCTCTTCGTTATGAATATCTTCCACGGACAAATTTTCCTCAATTTGTATTTCATCAAAGTGGGAGTGCTACTGGTTGTGACTGTGTTGATGGTTGTGCTGATAACTGCTTTTGTGCTATGAAAAATGGAGGTGAATTTCCTTATAATCTGAACGGAATTCTTGTGAGAGGGAAGCCTATAATTTTTGAATGTGGCCCTTTCTGCCGTTGTCCTCCACATTGCCGAAACCGTGTTGCACAAAATGGGATAAAAAATAGATTGGAAGTGTTTAGGTCAAGGGAAACATGTTGGGGAGTTAGGTCGTTGGACCTTATTCATGCTGGTGCCTTTATCTGTGAATATACAGGTGTTGTTCTGACTATGGAGCAAGCACAAATTCTGACGATGAATGGTGATTCATTGATATATCCAAGTCGGTTTTCTGATAGGCATATAGCAGAATGGGGGGATTTATCTCAGATATATTCTCATTACGTGCGTCCATCTTATCCATCAATTCCTCCTTTAGATTTTGCAATGGATGTGTCCACAATGAGGAATGTTGCTTGCTATATGAGCCACAGTCCAATTCCTAATGTGTTGGTTCAGTTTGTGCTGTATGATCACAATAATTTGATGTTTCCTCACCTTATGCTATTTGCAATGGAGAACATCCCTCCAATGAGGGAGCTCAGCCTTGATTATGGCGTGGCTGATGAATGGACAGGCAAGCTTTCTATATGTAACTAA 2055 0.4428 MDSVAPFQDLNHFPDVPASIPSSSTDPVNGVTTTPNILLVPKLEPKLEPLDEPFLNHRPQEPQEIEQAMFSNHALDGLSESQHTNFCEKNLAFVETQGESNEQDNVYAEFYRISEQFRSAFAKRLKRMGDVEVLDPDSRAIVPVPEENQVPAVVVSPRRTPRRKELVRVTDLRIEDERYFRDIIRRTRMIYDSLRVLTTVEEEKRCDLANNKRLRGDLRAASLMRDRGLWLNRDKRIVGSIPGIYIGDMFFFRMELVVVGLHGQPQAGIDYLPSSQSTNGEPIATSVIVSGGYEDDEDGGDVIIYTGHGGQDKKNSRQVVHQKLEGGNRAMERSMHYGIEVRVIRGFRYEGGVSSKIYVYDGLYRIVQCWFDVGKSGFGVYKYKLVRIEGQPEMGSAILRLAQTLRTNPLSIKPMAYLSLDISNKKENVPVRLFNDIDRDHDPLRYEYLPRTNFPQFVFHQSGSATGCDCVDGCADNCFCAMKNGGEFPYNLNGILVRGKPIIFECGPFCRCPPHCRNRVAQNGIKNRLEVFRSRETCWGVRSLDLIHAGAFICEYTGVVLTMEQAQILTMNGDSLIYPSRFSDRHIAEWGDLSQIYSHYVRPSYPSIPPLDFAMDVSTMRNVACYMSHSPIPNVLVQFVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEWTGKLSICN 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2230 684 SUPERFAMILY PUA domain-like 220 400 IPR015947 -
Dere03g2230 684 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 142 672 - -
Dere03g2230 684 Pfam SAD/SRA domain 238 391 IPR003105 -
Dere03g2230 684 MobiDBLite consensus disorder prediction 17 33 - -
Dere03g2230 684 SMART preset_2 419 511 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Dere03g2230 684 Gene3D SET domain 396 684 IPR046341 -
Dere03g2230 684 SMART G9a_1 234 391 IPR003105 -
Dere03g2230 684 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 221 403 - -
Dere03g2230 684 Pfam Pre-SET motif 422 519 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Dere03g2230 684 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 74 684 IPR025794 GO:0016571
Dere03g2230 684 ProSiteProfiles Pre-SET domain profile. 466 524 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Dere03g2230 684 Pfam SET domain 539 671 IPR001214 GO:0005515
Dere03g2230 684 ProSiteProfiles YDG domain profile. 239 387 IPR003105 -
Dere03g2230 684 SMART set_7 527 677 IPR001214 GO:0005515
Dere03g2230 684 MobiDBLite consensus disorder prediction 1 33 - -
Dere03g2230 684 Gene3D - 236 395 IPR036987 -
Dere03g2230 684 SUPERFAMILY SET domain 409 683 IPR046341 -
Dere03g2230 684 ProSiteProfiles PUA domain profile. 330 348 - -
Dere03g2230 684 ProSiteProfiles SET domain profile. 527 671 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2230 Dere-ChrDere03 34966801 34968855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2230 158 673 Su(var)3-9 homologs AT5G04940 37.593 1.79e-107 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dere03g2230 SAD_SRA 1.4e-48 CL0178