LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere03g2229	ATGTATTGGGGAGGCATGGCAGGGAATATGGGTTGGGGTATGAACATGATAGAGGAAGAGGGTTGGAGGAAGGGTCCTTGGACTGCTGAAGAAGACAGATTGCTCATTGAGTATGTCAGGCTTCATGGTGAAGGAAGATGGAACTCTGTTTCCAGGCTTGCAGGGCTGAAAAGAAATGGGAAGAGCTGCAGATTGAGGTGGGTGAACTATTTGAGGCCTGACCTCAAGAAGGGTCAGATAACCCCACAGGAAGAGAGTATCATTCTGGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCCTACCAGGAAGAACTGACAATGAGATAAAGAACTATTGGAGAACCCATTTCAAGAAAAAGGCTAAGAATCCCACTGATTCTGCAGAAAAGGCCAAAAATCGCCTCTTGAGAAGGCAGCAATTTCAGCAGCAACAACAGCAGATGCAGCAACAGCAGCAACAGCAACAGCAGCAACAACAGCTGCAATTCAACTTGGACATCAAAGGGATTATGGCCCTTCTAGAGGACAATGACCATAGAGTGGTGATGCCTTCTTTATCTCAAATGAAGCAAGAAATGTACCAGAACACCACAGAAGAGCAGAGCTGCTACTACTCTATGCTCAATGGCAATGCCTCTGTACCAGAAGCCTCATATGATGAAACCTTCTGGGATGGCCTGTGGAACTTGGATGATGTTCATGGAAATTTCAGTGCAGCAAGCAGAGCCAATCTGCACAATTTAGTTGCTCCCTTCTGTTAA	777	0.4633	MYWGGMAGNMGWGMNMIEEEGWRKGPWTAEEDRLLIEYVRLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKNPTDSAEKAKNRLLRRQQFQQQQQQMQQQQQQQQQQQQLQFNLDIKGIMALLEDNDHRVVMPSLSQMKQEMYQNTTEEQSCYYSMLNGNASVPEASYDETFWDGLWNLDDVHGNFSAASRANLHNLVAPFC	258

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere03g2229	258	Pfam	Myb-like DNA-binding domain	24	71	IPR001005	-
	Dere03g2229	258	Pfam	Myb-like DNA-binding domain	77	121	IPR001005	-
	Dere03g2229	258	ProSiteProfiles	Myb-like domain profile.	72	122	IPR001005	-
	Dere03g2229	258	SMART	sant	76	124	IPR001005	-
	Dere03g2229	258	SMART	sant	23	73	IPR001005	-
	Dere03g2229	258	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	23	71	IPR017930	-
	Dere03g2229	258	CDD	SANT	81	122	IPR001005	-
	Dere03g2229	258	ProSiteProfiles	Myb-like domain profile.	19	71	IPR001005	-
	Dere03g2229	258	FunFam	MYB-related transcription factor	81	125	-	-
	Dere03g2229	258	Gene3D	-	81	125	-	-
	Dere03g2229	258	CDD	SANT	26	71	IPR001005	-
	Dere03g2229	258	SUPERFAMILY	Homeodomain-like	21	118	IPR009057	-
	Dere03g2229	258	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	72	126	IPR017930	-
	Dere03g2229	258	Coils	Coil	143	166	-	-
	Dere03g2229	258	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	18	211	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Dere03g2229	258	Gene3D	-	24	76	-	-
	Dere03g2229	258	FunFam	Myb transcription factor	24	76	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere03g2229	Dere-ChrDere03	34924750	34925817	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere03g2229	19	258	MYB Transcription Factor Family	AT3G24310	60.920	1.96e-91	269

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Dere03g2229		Myb_DNA-binding	1.6e-16	CL0123