LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere03g2221	ATGGCATTGCAACCATGCTCGGACCAACTTGCCCATTACTTCGGTCCCAACTTCACCGACGCTACCGCCGCCGCTAACTTCATCTGCAACCGATTCGACGTTGTTGCCAACAATTTCACCGACACCTCCTTCGCCGTCGACAACACCTACCTCCTCTTCTCTGCTTACCTCGTCTTCTCCATGCAGCTCGGCTTCGCCATGCTCTGCGCCGGCTCCGTTCGCGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTCGACGCTGCTGCTGGCGGCCTCTTCTACTACCTCTTCGGCTTCGCTTTCGCCTTCGGATCGCCCTCCAACTCCTTCATTGGCCACCACTCCTTCGGCCTCAGCGGCGTCCCGTCGGATCTCTTCGATTACAGCTACTTCATCTACCAATGGGCTTTCGCCATCGCTGCCGCCGGCATCACCAGCGGCTCCATCGCGGAGCGAACTCAGTTCGTAGCTTACCTAATCTATTCCTCTTTCCTTACCGGCTTCGTCTACCCTGTTGTATCTCATTGGATATGGTCCAGTGACGGTTGGGCTAGCGCGAATCACTCCAACCTTCTTTTCGGATCCGGAGCCATCGATTTCTCTGGGTCGGGTGTGGTTCACATGGTGGGTGGCGTCGCGGGTCTGTGGGGTGCACTCATAGAAGGACCCAGGATCGGTCGATTTGACCATTCCGGTCGACCCATTGCGCTTCGCGGACACAGTGCCTCTCTGGTTGTTCTTGGGACTTTCTTGCTCTGGTTCGGATGGTACGGGTTCAACCCGGGTTCGTTCTTCAAGATTTTGAGCCGTTACGAATCTGGAAGCTACTACTACGGACAGTGGAGCGCGGTGGGTAGAACCGCCGTGACGACCACCTTAGCCGGTTGCACCGCCGCTCTGACGACTTTGTTTGGGAAGAGGATTCAGTCAGATCATTGGAACGTGACTGACGTCTGCAACGGGTTACTCAGCGGGTTTGCCGCCATCACCGCCGGATGCTCCGTCGTGGAACCGTGGGCGGCGATCATCTGCGGGCTCGTGGCGGCGTTGGTGTTGATTTCCTGCAACAAATTGGCAGAGAAGATGAAGTTCGATGACCCGTTGGAGGCAGCGCAGCTACACGGCGGGTGCGGCGCGTGGGGGTTAATCTTCACGGCGTTGTTCGCGGAGAAGAAGTACGTGAATGAGGTGTACCCGGGGAAACCGGGTCGGGCATACGGGTTGGTCATGGGTGGTGGGGGAAAGCTATTGGCGGCAAATATAGTTGAGATGTTGGTGATTATCGGGTGGGTCAGTGCTACAATGGGTCCTTTGTTCTTGGTTCTTCACAAGCTGAAACTATTGCGGATCTCTCATGAGGATGAATTGTCGGGTATGGATCTGACCCGACATGGCGGGTTTGCATATGCATACGAGGATGAATCAGTAAGGAATCGATTACAGATCGAAAGAGAACTAATTGCTCGCACTCAGACCACAAATTAA	1491	0.5526	MALQPCSDQLAHYFGPNFTDATAAANFICNRFDVVANNFTDTSFAVDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGSPSNSFIGHHSFGLSGVPSDLFDYSYFIYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWIWSSDGWASANHSNLLFGSGAIDFSGSGVVHMVGGVAGLWGALIEGPRIGRFDHSGRPIALRGHSASLVVLGTFLLWFGWYGFNPGSFFKILSRYESGSYYYGQWSAVGRTAVTTTLAGCTAALTTLFGKRIQSDHWNVTDVCNGLLSGFAAITAGCSVVEPWAAIICGLVAALVLISCNKLAEKMKFDDPLEAAQLHGGCGAWGLIFTALFAEKKYVNEVYPGKPGRAYGLVMGGGGKLLAANIVEMLVIIGWVSATMGPLFLVLHKLKLLRISHEDELSGMDLTRHGGFAYAYEDESVRNRLQIERELIARTQTTN	496

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere03g2221	496	NCBIfam	ammonium transporter	47	471	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Dere03g2221	496	Pfam	Ammonium Transporter Family	50	471	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Dere03g2221	496	ProSitePatterns	Ammonium transporters signature.	201	226	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
	Dere03g2221	496	Gene3D	Ammonium transporter AmtB like domains	25	490	IPR029020	-
	Dere03g2221	496	SUPERFAMILY	Ammonium transporter	46	452	-	-
	Dere03g2221	496	FunFam	Ammonium transporter	28	485	-	-
	Dere03g2221	496	PANTHER	AMMONIUM TRANSPORTER	27	467	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere03g2221	Dere-ChrDere03	34831581	34833071	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere03g2221	6	486	Inorganic Solute Cotransporters	AT4G13510	78.144	0.0	762