Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2184 ATGTTAACTAGGTCCTTAGTAGTTTGCCCCTGCAATTTCTACTCAAGAATACATTGGACACATCTTCACACATTAGAATGGTTGATGGCGTGTTTGCAATGCTTCGGCTGCTTCTCTCTTGTAGCAGTTGTTTATGTGCTTCTAGCTGAATTGAGTGAAATTGAACTATTTACAGTTGATCAAGCTCATTTTGAGCTGGTTTTGAATTCTTGTGATCATCCTCAAGGCTTTTGGTCTGTTGAGTGCCTTTTTGAGGTTAATTTTGCAGTCATGTGCTTAGAGGTAGTTATTTTGGAGATCAGAGTTTTGATGGGATTTGAGCTTCCAATTAGACCAATACCTGGTCTAAAGTCTTCTAATGCTTGTGACGCCTACAATTCCAGGATGGAGTCCCTTGGTTTTGTGGATGATTTCTTGGATTTCTCATCAGACATAGGTGTGAAAGTTGATGGGGAAGATAATTCCAGGAAAGCCCTTCCGTCAATTAACCCAGAATGCAGTGATCCAGCATCATTCAATGTTTTGGACCATGATGATCCTGCTAGCCATTCATTTTCTGTTGATTGGAATTGGTTGAGGGAGTTTGCAGAAGAGGAGCTTGAGTGGCTATCTAACAAAGATGCATTTCCTGCCATTGAAACATTTGATGACATACTTTATAGTGAACCCAACATATCAAAGCATCAAAACACAGTCTCAGCACTTCAATACAGCCCAAGCAGTACCAACAGTAACAACAGCACTAACAGCAGTGCCCTTCTAAACTTCAATAATCACATTAAGGTACCTGTTCGTGCAAGGAGCAAGCGTCAGAGTAGGCTTCACCATGGCCTTATTGACACCTCCAGCCAGCACTTCTGGTGGAGTCAAGAGAGTGAAAAGATTGTCAAAGCTGAAGCAGTGATAAGAATCTCAACAATTGGTAGGAAATGCCAGCATTGCGGAGCAGAAAAAACTCCACAATGGCGGGCAGGTCCACTAGGACCAAAAACCCTTTGTAATGCATGTGGGGTTAGGTACAAGTCAGGCCGGCTCGTGCCTGAATACCGACCTGCAAGTAGCCCAACATTTTGTAGTGCAATGCATTCAAATTTGCACAGGAAGGTAATGGAGATGAGGAGCCAGAAGCATGGAAATGGTTTTGAATGCGATGAATAA 1158 0.4257 MLTRSLVVCPCNFYSRIHWTHLHTLEWLMACLQCFGCFSLVAVVYVLLAELSEIELFTVDQAHFELVLNSCDHPQGFWSVECLFEVNFAVMCLEVVILEIRVLMGFELPIRPIPGLKSSNACDAYNSRMESLGFVDDFLDFSSDIGVKVDGEDNSRKALPSINPECSDPASFNVLDHDDPASHSFSVDWNWLREFAEEELEWLSNKDAFPAIETFDDILYSEPNISKHQNTVSALQYSPSSTNSNNSTNSSALLNFNNHIKVPVRARSKRQSRLHHGLIDTSSQHFWWSQESEKIVKAEAVIRISTIGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFCSAMHSNLHRKVMEMRSQKHGNGFECDE 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2184 385 Pfam GATA zinc finger 311 344 IPR000679 GO:0006355|GO:0043565
Dere03g2184 385 ProSiteProfiles GATA-type zinc finger domain profile. 305 341 IPR000679 GO:0006355|GO:0043565
Dere03g2184 385 FunFam GATA transcription factor 302 383 - -
Dere03g2184 385 SMART GATA_3 305 355 IPR000679 GO:0006355|GO:0043565
Dere03g2184 385 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 307 368 - -
Dere03g2184 385 CDD ZnF_GATA 310 357 IPR000679 GO:0006355|GO:0043565
Dere03g2184 385 Gene3D - 305 356 IPR013088 GO:0006355|GO:0008270
Dere03g2184 385 ProSitePatterns GATA-type zinc finger domain. 311 336 IPR000679 GO:0006355|GO:0043565
Dere03g2184 385 PANTHER GATA TRANSCRIPTION FACTOR 134 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2184 Dere-ChrDere03 34445166 34449850 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2184 129 380 C2C2-Gata Transcription Factor Family AT3G24050 39.510 4.62e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere03g2184 GATA 1.6e-16 CL0167