Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2177 ATGCCTATTGGACCAAAGGGTTTTGTTCTCAGATTTGGACAAAGTCTTGCGCTGACAGTGATTTGTGAACAAGCTGCAGCTACGAAGATGCTTCTAGACAAGAATGCACATCAGGAAACCCATTATGATGTTCTCAATGTAAAGGAAGATGCAAGCTACGAAGAGATTCGTGCTAGTTACCGCGGTGCTATACTCAATTTACATCCTGACAAGTTATTGAAGACATCTGAGATGTCAAGCGGTCATCAAACCTCAGGAGATAGATTCCTCAGAGTACAGAAGGCATGGGAAATTCTCAGTGATTCAAGCTCTCGTTCCATTTATGATAATGAGCTGCGTGGTGCAAGGCAGGATGCGTTGGCTGGTGAAGTTGCAGAAGATCTAAGCATGCAGGATATGGTGGCCGAAGATGCTGGAGAAGCATTAGAGCTGTCTTACCAGTGCAGATGTGGTGATTACTTCTCCATAGACTCTGCAGAATTGGGGAAAATGGGGTATACATTGTTGAGGGACGGAAGTGAGATTTCTTTACTCACAGTTGATGCTTTGCCAGGGTCAGTGATTCTTCCCTGTGGATCTTGTTCTCTGAAAGCTCGTCTACTCATCAACATGGATTATAACATTTGA 627 0.4402 MPIGPKGFVLRFGQSLALTVICEQAAATKMLLDKNAHQETHYDVLNVKEDASYEEIRASYRGAILNLHPDKLLKTSEMSSGHQTSGDRFLRVQKAWEILSDSSSRSIYDNELRGARQDALAGEVAEDLSMQDMVAEDAGEALELSYQCRCGDYFSIDSAELGKMGYTLLRDGSEISLLTVDALPGSVILPCGSCSLKARLLINMDYNI 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2177 208 Pfam CSL zinc finger 129 201 IPR007872 -
Dere03g2177 208 SUPERFAMILY Chaperone J-domain 36 113 IPR036869 -
Dere03g2177 208 FunFam DNAJ heat shock N-terminal domain-containing protein-like 118 206 - -
Dere03g2177 208 PRINTS DnaJ domain signature 84 104 IPR001623 -
Dere03g2177 208 PRINTS DnaJ domain signature 60 75 IPR001623 -
Dere03g2177 208 PRINTS DnaJ domain signature 42 60 IPR001623 -
Dere03g2177 208 Pfam DnaJ domain 40 109 IPR001623 -
Dere03g2177 208 SMART dnaj_3 39 104 IPR001623 -
Dere03g2177 208 ProSiteProfiles DPH-type metal-binding (MB) domain profile. 124 203 IPR007872 -
Dere03g2177 208 CDD DnaJ 40 101 IPR001623 -
Dere03g2177 208 PANTHER DPH3 HOMOLOG-RELATED 40 204 IPR044248 GO:0017183|GO:0046872
Dere03g2177 208 SUPERFAMILY CSL zinc finger 125 204 IPR036671 -
Dere03g2177 208 Gene3D DnaJ domain 24 117 IPR036869 -
Dere03g2177 208 Gene3D DPH Zinc finger 118 207 IPR036671 -
Dere03g2177 208 ProSiteProfiles dnaJ domain profile. 40 112 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2177 Dere-ChrDere03 34379777 34380656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2177 41 109 C2H2 Transcription Factor Family AT1G74250 42.029 1.36e-10 58.2