Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2173 ATGTTCTTCTTCTTTTTCTTCTCGTTCTCTTCACTATTCAGTGCCTATCTCTTCTTCATCTCTCTCCTATATAGCCCTGCCATTTCTTCTAACCATGAAGCTTATCTACTTTATTCTTGGCTTCACAACTCTTCCTCACCACCCCCTTCAAATTTCTCAAACTGGAATATTTGTGACAGAAACCCATGCAACTGGACCTCCATAACTTGTTCTCCTCAAGATTTTGTCACAGAAATTAATATAGTCAATATATCTCTTAAGCTGGCTCTACCTTCCAACCTCTCTTCCTTTCGTTTTCTAAGTAAACTTGTCATATCAAATGCAACGCTCACTGGAAACATAGATTCTGATATCGGTGCTTGTTCCGCCCTTACTGTCATTGATCTTAGCAACAATAATCTCACTGGCTCTATCCCTGCAAGTATTGGGAATCTCCAAAATCTGGAGGCTTTGTTCTTAAACTCCAACTTGCTCACCGGGATTATCCCACCTCTACTAGGTAAATTATCAAGACTTAAGGTTCTTAGAGCTGGAAGAAACAAAGACATTACTGGGAATATACCACAGGAGCTTGGAGATTGCATCAATTTGACGGAGTTGAGGTTAGCTGAAACCAGTATATTTGGCTCTTTGCCAGCTTCATTGGGCCGGCTTAGAAAGCTTCGGATATTGTCTATTTATCAGACAAAGCTTTCCGGTGAGATCCCACCTGATATAGGTAACTGCTCTGAGCTGGTGGAGTTGGGTCTATACTCTAATAATCTATTAGGTTCTATTCCATTTGATCTAGGAAAGCTTCAAAAGTTGCAGAGTTTGCTTTTATGGAATAATAGTCTTGTTGGGGTTATTGCTGAACAGATTGGCAACTGTACAAGCTTGAAAATACTTGACCTTTCAATGAATTTTCTATTTGGGGCTATCCCTTTGTCCATAGGTGGTCTTCAGAAACTTGAGGAATTTTCTATCGCTCAGAACAATGTCTCTGGTTTTATACCTCCATATCTCTCCAATGCCACAAAGCTAAAACGAATTGACCTTTACTTTAATCAAATATCAGGTTCGATCCCACCAGAGCTTGGGATGTTGCAAAAGCTCACTGAATTCTATGTATATAACAACCAGCTCGAAGGTATTATCCCTTCTACTTTTGCCAACATCAGTAACCTCAATAGACTAGACTTGTCTTATAATGCTCTTACTGGAAGCATTCCAAAAGGTCTATTTCAGCTACAAAACCTCTGCATACTGGTCATGATTTTCAATGACATATCAGGCGCAATTCCATCAGAGGTAGGTAACTGCAGCTCTCTTTCTTGGCTGAGGCTTGCAAGAAATAACATTTCAGGTGAGATTCCAAGGACAATTGGTAATCTCAAGAGATTAAGCTTCTGTGACTTATCTGGGAACCGTCTATATGGGCCTGTGCCGGATGAGATTGGTGGTTGCTCAAACTTAAAAATGGTAGACCTCAGTGACAATTACTTAGAAGGTCCACTGCCGAAGTCACTGTCAACACTATCCAATCTCATGGTTCTGAATGCATTTAATAATAGATTTTCAGGTCAGATACCTACAAGCTTTGGTAATCTTTCCTCCATAATTAGTCTAATACTAAGTAGAAACAAATTCTTTGGACCAATTCCTCTATCTCTTGGTCTATGTTCAAAACTCGAAATGCTTGATCTTAGCAGTAATGAACTCACTGGAAGCATCCCAAAAGAGCTAGGTGACATTGGAACTCTTGTAATTATTCTCAACCTTAGTCACAATTCACTTACTGGATCTATCCCTTATAAAATATCTAAGCTAAACAAACTCTCAGCGATGGACATTTCACATAACATGTTGGAGGGAGATTTGCAGCCACTTTCTGAGCTTGAAAGTATCAACTCTCTCAATATTTCTTATAATAACTTCACTGGCTATCTTCCAGACACGCGGATTTTTAGACAGTTATCAGAAGAAGAATTCATGGGAAATACTGGTCTTTGTTCTAGGATTCAGGATTCATGCTCCTTTAATGATGCAAGCAGGGAAAAATCAACTAGAAATATGAAGAAGTCAGAAATGCTTAAACTAGTAATCGGATTGTTGGTAGTCTTGACAGTAATACTCATTGCTACGGGGATCAATGCAGTTATTAGGGCAAGAAGAAATTATTCAAAAATGGCGAACTCATGGGAATGGCAGTTCACTCCATTCCAGAGGGCAAGCTTCTCAGTTGAACAAGTACTTAACAGCTTAGTAGATGGGAACATAATAGGAAAAGGAAGCTCTGGTGTTGTGTATCGTGCTGATCTTGGTAATAACAAAGTCATAGCCGTAAAGAAACTCAAGCCAACCACTATGGTTGCAGGTGATGGACTTAATGATGACAAGAGCAGAACTCATGGCTCATTCCCAAAAGAGATGAAAACCCTTGGTTTAGTCCGACATAAGAACATTGTGAGATTCCTAGGATGTTGTTGGAATCAAGACACAAGATTGCTTATGTATAACTATATGCCAAATGGGAGCTTGGGTAGTCTACTTCATAAAAGGACTAAACATTCTTCTTTGGAATGGGGAGTTAGCGAGTCCTCCAATGCAATTGCTGGTTCTTATGGGTATATTGCTCCTGGTTAG 2625 0.395 MFFFFFFSFSSLFSAYLFFISLLYSPAISSNHEAYLLYSWLHNSSSPPPSNFSNWNICDRNPCNWTSITCSPQDFVTEINIVNISLKLALPSNLSSFRFLSKLVISNATLTGNIDSDIGACSALTVIDLSNNNLTGSIPASIGNLQNLEALFLNSNLLTGIIPPLLGKLSRLKVLRAGRNKDITGNIPQELGDCINLTELRLAETSIFGSLPASLGRLRKLRILSIYQTKLSGEIPPDIGNCSELVELGLYSNNLLGSIPFDLGKLQKLQSLLLWNNSLVGVIAEQIGNCTSLKILDLSMNFLFGAIPLSIGGLQKLEEFSIAQNNVSGFIPPYLSNATKLKRIDLYFNQISGSIPPELGMLQKLTEFYVYNNQLEGIIPSTFANISNLNRLDLSYNALTGSIPKGLFQLQNLCILVMIFNDISGAIPSEVGNCSSLSWLRLARNNISGEIPRTIGNLKRLSFCDLSGNRLYGPVPDEIGGCSNLKMVDLSDNYLEGPLPKSLSTLSNLMVLNAFNNRFSGQIPTSFGNLSSIISLILSRNKFFGPIPLSLGLCSKLEMLDLSSNELTGSIPKELGDIGTLVIILNLSHNSLTGSIPYKISKLNKLSAMDISHNMLEGDLQPLSELESINSLNISYNNFTGYLPDTRIFRQLSEEEFMGNTGLCSRIQDSCSFNDASREKSTRNMKKSEMLKLVIGLLVVLTVILIATGINAVIRARRNYSKMANSWEWQFTPFQRASFSVEQVLNSLVDGNIIGKGSSGVVYRADLGNNKVIAVKKLKPTTMVAGDGLNDDKSRTHGSFPKEMKTLGLVRHKNIVRFLGCCWNQDTRLLMYNYMPNGSLGSLLHKRTKHSSLEWGVSESSNAIAGSYGYIAPG 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2173 874 Gene3D Ribonuclease Inhibitor 409 675 IPR032675 -
Dere03g2173 874 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 183 404 - -
Dere03g2173 874 Gene3D Ribonuclease Inhibitor 192 306 IPR032675 -
Dere03g2173 874 Gene3D Ribonuclease Inhibitor 307 407 IPR032675 -
Dere03g2173 874 SUPERFAMILY RNI-like 330 645 - -
Dere03g2173 874 FunFam LRR receptor-like serine/threonine-protein kinase 504 579 - -
Dere03g2173 874 ProSiteProfiles Protein kinase domain profile. 748 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g2173 874 ProSitePatterns Protein kinases ATP-binding region signature. 754 777 IPR017441 GO:0005524
Dere03g2173 874 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 405 499 - -
Dere03g2173 874 FunFam Putative LRR receptor-like serine/threonine-protein kinase 584 669 - -
Dere03g2173 874 Gene3D Transferase(Phosphotransferase) domain 1 735 869 - -
Dere03g2173 874 Pfam Leucine rich repeat 123 180 IPR001611 GO:0005515
Dere03g2173 874 Pfam Leucine rich repeat 364 423 IPR001611 GO:0005515
Dere03g2173 874 Pfam Protein tyrosine and serine/threonine kinase 751 858 IPR001245 GO:0004672|GO:0006468
Dere03g2173 874 FunFam Nuclear pore complex protein NUP107 30 182 - -
Dere03g2173 874 SMART LRR_typ_2 266 290 IPR003591 -
Dere03g2173 874 SMART LRR_typ_2 362 385 IPR003591 -
Dere03g2173 874 SMART LRR_typ_2 386 410 IPR003591 -
Dere03g2173 874 SMART LRR_typ_2 145 169 IPR003591 -
Dere03g2173 874 SMART LRR_typ_2 218 242 IPR003591 -
Dere03g2173 874 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 287 855 - -
Dere03g2173 874 Gene3D Ribonuclease Inhibitor 30 191 IPR032675 -
Dere03g2173 874 SUPERFAMILY Protein kinase-like (PK-like) 721 855 IPR011009 -
Dere03g2173 874 SUPERFAMILY L domain-like 38 380 - -
Dere03g2173 874 PRINTS Leucine-rich repeat signature 124 137 - -
Dere03g2173 874 PRINTS Leucine-rich repeat signature 386 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2173 Dere-ChrDere03 34357176 34359971 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2173 26 851 Receptor kinase-like Gene Family AT5G56040 40.658 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere03g2173 PK_Tyr_Ser-Thr 8.8e-12 CL0016