Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2171 ATGATTGTGTCCCTTCGAAAGTTCAGAGACATCAAAGCTAATAACATCCTTATTGACTTTGAATTTGAAGCTTGCATTGCTAACTTTGGCTTGGCTAAGTTTGTTGATGATTGTGGTTTTATCAAGTGCTCTAATGCAATTGCTGGTTCTTATGGGTATATTGCTCTTGAGTATGCCTACATGATGAAGATCACAAAAAAGAGTGATGTTTATAGTTTTGGTGTAGTTTTGTTGGAAGTCTTAATGGTAACGAACTAG 258 0.3566 MIVSLRKFRDIKANNILIDFEFEACIANFGLAKFVDDCGFIKCSNAIAGSYGYIALEYAYMMKITKKSDVYSFGVVLLEVLMVTN 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2171 85 Gene3D Transferase(Phosphotransferase) domain 1 7 85 - -
Dere03g2171 85 Pfam Protein tyrosine and serine/threonine kinase 9 82 IPR001245 GO:0004672|GO:0006468
Dere03g2171 85 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 9 81 - -
Dere03g2171 85 ProSiteProfiles Protein kinase domain profile. 1 85 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g2171 85 SUPERFAMILY Protein kinase-like (PK-like) 8 82 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2171 Dere-ChrDere03 34331455 34332148 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2171 9 81 Receptor kinase-like Gene Family AT5G65700 67.123 2.11e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere03g2171 PK_Tyr_Ser-Thr 1.2e-13 CL0016