Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2166 ATGTCTGTGTTTCTGTTTATCCCGTTCGTACGATTCCCAATTCTACGGGTGATTTTGGTCCGTAACGGAATTGCTGACGTGGATCCGTTAGCTAACCTGTACTGTAGTAATAAAGCGTTTATGTTGCTGCTCTGCGAGTCCACTCTTCCCAATTCCTTCGTCTTCCTTCGGCTTTTTCCTCTGCAAATTGTCTCTCTCTTTCGCTTTTTTTTAACCTTTGCTCTTTTTCTTCTCACCTTCCACATTCCCGCTGAGACTGAGAGAGAGATTGAGACAGAGAAGAAAGTGAAACTCGAATTAAGAGGAGCGGCAATGGCAGCTTCTGGGAATTATGTCAATGTCTGCTTGCTGGTGCTCGTAACGTTGTTCATTGGAGCCATGGCTGGAGTACAGATCTCTGAACCTAGGAATGTTGAAGCACAGAAGTTGCAGAGCTTAAGCAACACGTCAATGGCGGCCAGGGCCAAACAGGCTGAGGAATTGAATGAGCGTGCTGTAGCTGACTCAGAGGAGGTTGTTTCCCATGTTGCAATGACCATCCGGAACAGCACAGAAAGGAGAAAGTTGGGATTTTTCTCCTGTGGAACCGGTAACCCCATTGATGATTGCTGGCGCTGCGACGCCGACTGGCATCGTAACCGGAAGCGCCTTGCAGACTGTGGCATTGGATTTGGTAGGAACGCCATTGGTGGTCGTGATGGTCGCTTCTATGTCGTCACTGACCCCAGAGACGATGACCCTGTCAACCCCAAGCCCGGCACTCTGCGTCACGCAGTAATCCAGGACAGGCCTCTCTGGATTGTGTTCAAGCGTGACATGGTGATCCAATTGAAGCAGGAGCTCATTGTGAACAGCTTCAAGACCATTGATGGGCGTGGGGCCAATGTCCACATTGCTAATGGAGGCTGCATCACAATCCAGTATGTTACAAACGTTATAATCCATGGTCTTCACATTCATGACTGCAAACCCACAGGCAATGCCATGGTGAGAAGCTCCCCAACACACTATGGTTGGAGGACAATGGCGGACGGTGATGCCATTTCCATATTTGGATCGAGTCACATCTGGGTCGACCACAATTCTCTGTCCCATTGCGCTGATGGCCTTGTCGACGCTGTCATGGGCTCTACTGCTATTACAATCTCCAACAACCACTTAACCCACCACAACGAGGTGATTCTGCTGGGCCACAGTGATTCGTACACAAGAGACAAGCAAATGCAAGTGACCATCGCTTACAACCATTTTGGAGAGGGGCTCATCCAGAGAATGCCAAGGTGTAGGCATGGATATTTCCACGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCGATTGGTGGAAGTGCGAACCCCACCATCAACAGCCAGGGGAATAGATACAATGCTCCAGTTAACGCCTTTGCCAAGGAGGTGACAAAGAGAGTTGAAACAGCGGCAACCGAGTGGAAGGGTTGGAATTGGAGGTCAGAGGGAGATCTGATGCTGAATGGTGCTTACTTCACCCCATCTGGGGCTGGAGCTTCAGCCAGCTATGCCAGAGCCTCTAGCTTAGGAGCTAAATCCTCTTCAATGGTTGGCTCGATGACTTCTGGTGCTGGTGCACTTGGTTGCAAAAGAGGCCGTCAGTGCTAG 1641 0.4985 MSVFLFIPFVRFPILRVILVRNGIADVDPLANLYCSNKAFMLLLCESTLPNSFVFLRLFPLQIVSLFRFFLTFALFLLTFHIPAETEREIETEKKVKLELRGAAMAASGNYVNVCLLVLVTLFIGAMAGVQISEPRNVEAQKLQSLSNTSMAARAKQAEELNERAVADSEEVVSHVAMTIRNSTERRKLGFFSCGTGNPIDDCWRCDADWHRNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPTHYGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPVNAFAKEVTKRVETAATEWKGWNWRSEGDLMLNGAYFTPSGAGASASYARASSLGAKSSSMVGSMTSGAGALGCKRGRQC 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2166 546 PRINTS Pollen allergen Amb family signature 517 540 IPR018082 -
Dere03g2166 546 PRINTS Pollen allergen Amb family signature 446 465 IPR018082 -
Dere03g2166 546 PRINTS Pollen allergen Amb family signature 244 269 IPR018082 -
Dere03g2166 546 PRINTS Pollen allergen Amb family signature 344 365 IPR018082 -
Dere03g2166 546 PRINTS Pollen allergen Amb family signature 488 512 IPR018082 -
Dere03g2166 546 PRINTS Pollen allergen Amb family signature 280 296 IPR018082 -
Dere03g2166 546 PRINTS Pollen allergen Amb family signature 424 443 IPR018082 -
Dere03g2166 546 PRINTS Pollen allergen Amb family signature 220 237 IPR018082 -
Dere03g2166 546 SMART amb_all 272 469 IPR002022 -
Dere03g2166 546 Gene3D - 197 539 IPR012334 -
Dere03g2166 546 PANTHER PECTATE LYASE 18-RELATED 161 544 IPR045032 GO:0030570
Dere03g2166 546 SUPERFAMILY Pectin lyase-like 171 540 IPR011050 -
Dere03g2166 546 FunFam Pectate lyase 197 539 - -
Dere03g2166 546 Pfam Pectate lyase 278 461 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2166 Dere-ChrDere03 34298780 34303621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2166 131 546 Polysaccharide Lyase AT4G13710 79.147 0.0 720