Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2158 ATGAAAATTACAATACTAATGCTCATATCATTTCCAAGCATCCCATCTTGTGTAGTTCAGCTTGTTGCTTTTGGACCCTTTTTTAACAGTTTACTCTTTCATCATATGACTGGCTTAAATTTTGTGCATGGTGCAGAAGAGAACATGGAGGATATGGAGATTGATGAAATCGTGGATGTTCCTGATACTCCTGATAGATTAACCACCAGGCTTGTTGGTCGAAAATATGTTGGTAATCCTGATCTATGTGTGAATGAGAAGAGGGAGAGGGGCTTTCCTGTTGCTGAAAATAGTATGAATGGGAGACTGGCTTTTTGTCTTCAAAAGAACTCGAACAGTGGTGAAATGAATAACTGCATGGCGGCATCCCCATCAAAGAAATCTTATGCTCCTCAAGATGCTCCCATATTTAGGAGGTCCCAAACTGACAAATTTTTTGGTAATGAGTTGACACACTGTAATGGATCTGAAAAGATGGAGAAAGGGAAAAACACATGCCTTAAGTTTCCTTCTAAATCATCTTCTTGTGGCGGTGAGGGTGTTGCTATTTTTGACTTGACTGAAGTAAAGGAACAGCCCAAAAAACTCAAGCCAGTTTTCTCACATCATGGATTGAAAAATAATGCAGCTGAAACCAAGAAAGAACTGAAAGCAATCGTTGGGAACTCTCCTATAACTTGCATCCCTGGTTCTTCAAATACATCTAGCAATGCCTTTGCAGGAAAGTGTAAAATAGATGATAAAACACTTCCATGCTCTAATATATCTGTTGATCGTGGAAAGACTATCGATCTATCAAGTGATTCTCAACAAAAAACTGAAAAGCAGATGTCTTTGCCTCCTCGCTTTTTAACTGCTCCAAGATTCAGAGGGCAAAAGAGATTGGTGAGGAATGGGTGTATCTCACCACATAATATTGCAGCAAGGGCAAAACAATCAGCTGAACAGAATAGTCAGAGAACCAATGATGTTGAACAGAGCCATGCTGAGGATGCTGTTTCTAGCAATACGATGTCTCTTGTCTGTATCAATGATATAGTTGCTGAAGAGAGAAGTGGCAGCAGATTGAAAGGAAAAGAATTGTTTATTCATCCTTCAAGCATGCATGATGCTGGAACTATTCAAACAGCTAGCAGCATCCCTGTGGTCAATTGTGAAGAGGCCAATGGTACCAGTAATGCTATCAGAAATTCGCTTGAAAGCTTTGAGGAATCAGATGGTTCGAGAACTACACATAACCGCAGGAATATCGATCAGCCCTTGCATGATGTAACTGGGCATTATTCAAGGAGAGATAATGATTCTGAAAGCATTATTAATGCACAGTATAGGAATAGAGTGGACAGAAGAGACACTGGGAGCAGTCAAATCATTAAGAATGTACGATATCCTCTTGCAAATCATGCAACTTCTCTGATCATTGCAGATGCAGAACAGTCCACTAGACCTTGTCCTGCAGCTGACAAACTGACTAAAAGGCAAAGGAAAAATGGATCAGCTTCAGGAAATCCTAATTCAGAGATGATTATCTTTGATTTACTTGGGGAATCATCAAATTCAAGCTCATCCAGAAGCCCTGTCTTGGATGCTGAAGTCATTGAGCTGTTACCTGAAGCAACAAATGCCAACAGAGTGTCTCACGATTTAGATGACATGAACAATGATGATTTGGATGCCCGGGCTAGACAGGTTGAAGCAGATGAGATATTGGCCCGCGAACTCCAAGAACAACTATATCACGAAGCTTCTTTTGATGGGGGAGAGCATATTGATGAACATTTAGCGTGGGAGTTGCAACATGAGGAGGAGCTTCGGCATACATCTACTGAGAGTCGCCATATATCACATCCTAGATGGTTGTCAAGGGCACCCTCAAATAGACAGTCTCGTTCCCGGTCTCATCAAAGCCCTACAAATAGAAGGAGAACTGTGCCTCATGTTCCTCTCTCTAATAGAGTGTCACAGTTGAGGGGTCGCAATATAAATCGTCCTTCAACACCTGTCATCTCAACTAGAGGAAGGCGTCTCCGGTTTCCTGTGGATATGGACTTTGACATGAGACTTGATATATTGGAAGCATTAGAGGATGCAGTTGGGGATATTAGTGACATGGGAAATATTGACGACATATTTCAAGCTCATCATGATTTCAATGAAAATGATTATGAAATGTTATTGGCCCTTGATGAGAACAATCACCAGCATGCTGGTGCATCTGCCCATCAGATCAATAATTTGCCGCAGTCCACCGTACAGACTGACAACTTCCAAGAGGCGTGTGCTATATGTCTTGAGATCCCAGTTATGGGAGAAACCATTCGCCATCTCCCTTGTTTGCACAAATTTCACAGAGATTGTATTGATCCTTGGCTCCGTAGGAGGACATCATGCCCAGTGTGCAAGTCATCTATAACCTAA 2418 0.4152 MKITILMLISFPSIPSCVVQLVAFGPFFNSLLFHHMTGLNFVHGAEENMEDMEIDEIVDVPDTPDRLTTRLVGRKYVGNPDLCVNEKRERGFPVAENSMNGRLAFCLQKNSNSGEMNNCMAASPSKKSYAPQDAPIFRRSQTDKFFGNELTHCNGSEKMEKGKNTCLKFPSKSSSCGGEGVAIFDLTEVKEQPKKLKPVFSHHGLKNNAAETKKELKAIVGNSPITCIPGSSNTSSNAFAGKCKIDDKTLPCSNISVDRGKTIDLSSDSQQKTEKQMSLPPRFLTAPRFRGQKRLVRNGCISPHNIAARAKQSAEQNSQRTNDVEQSHAEDAVSSNTMSLVCINDIVAEERSGSRLKGKELFIHPSSMHDAGTIQTASSIPVVNCEEANGTSNAIRNSLESFEESDGSRTTHNRRNIDQPLHDVTGHYSRRDNDSESIINAQYRNRVDRRDTGSSQIIKNVRYPLANHATSLIIADAEQSTRPCPAADKLTKRQRKNGSASGNPNSEMIIFDLLGESSNSSSSRSPVLDAEVIELLPEATNANRVSHDLDDMNNDDLDARARQVEADEILARELQEQLYHEASFDGGEHIDEHLAWELQHEEELRHTSTESRHISHPRWLSRAPSNRQSRSRSHQSPTNRRRTVPHVPLSNRVSQLRGRNINRPSTPVISTRGRRLRFPVDMDFDMRLDILEALEDAVGDISDMGNIDDIFQAHHDFNENDYEMLLALDENNHQHAGASAHQINNLPQSTVQTDNFQEACAICLEIPVMGETIRHLPCLHKFHRDCIDPWLRRRTSCPVCKSSIT 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2158 805 PANTHER SI:CH211-59O9.10 302 805 - -
Dere03g2158 805 Pfam Ring finger domain 759 801 IPR001841 -
Dere03g2158 805 SMART ring_2 760 800 IPR001841 -
Dere03g2158 805 MobiDBLite consensus disorder prediction 486 506 - -
Dere03g2158 805 MobiDBLite consensus disorder prediction 401 436 - -
Dere03g2158 805 MobiDBLite consensus disorder prediction 308 332 - -
Dere03g2158 805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 726 805 IPR013083 -
Dere03g2158 805 FunFam RING/U-box superfamily protein 725 805 - -
Dere03g2158 805 MobiDBLite consensus disorder prediction 402 434 - -
Dere03g2158 805 CDD RING-H2_PA-TM-RING 760 801 - -
Dere03g2158 805 MobiDBLite consensus disorder prediction 607 668 - -
Dere03g2158 805 SUPERFAMILY RING/U-box 759 804 - -
Dere03g2158 805 MobiDBLite consensus disorder prediction 309 332 - -
Dere03g2158 805 MobiDBLite consensus disorder prediction 640 668 - -
Dere03g2158 805 ProSiteProfiles Zinc finger RING-type profile. 760 801 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2158 Dere-ChrDere03 34166087 34176429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2158 552 805 C3H Transcription Factor Family AT1G04790 50.195 4.64e-68 235