Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2140 ATGGACATGGACATGGATATGGACGTTCCCCTTCCAGAAGAACTCGAATTGCTGGAATCGAATACTCGTCTTCTAGAAGACTACCCAGACCTGGGGCCGCCGGAACCCTACCCGGATGAAGATCAAGAAACCCCATCAACAGCACGACCACCATCATCCCCAGATCTTGAATACGAATCCGAAGTCCAAGTCATTGGCCACAAGCGTTCGAGGTCGGATAGTCCCAATGGATCATTTTCAGAAGCTGTGGAGCCGTCAGAGGAGAAAAGGAGCAGGAATGACGAATCGGCACGGGCGACTGACGAGGATTGGCTTCGCTACTCGCCACCCCAGGGGAGCGATTCTGTAGTGGCAGAACGAGTGAGCTTTTTGAACGAGAAGACGTTATCCAGGTATGCATCGGAAATCGATGGGGAGTGTGTACCGGTCACTGCACCAAACGGAGACAGGGTTTATGCGAAGTTAGATAGATTGGGAGGGGAGGAACGGCTGAAGAAACTGGATGTGAGAGCAAATTCTGATGGTCTTCTTTTAGAACCCATTAATATTCTATTTGAGAAATTGGAGCAAGAGGCTTTCACTAAGACTTTGAAAGCTAGTTCCGAATGCCAAAGTGTTCCAGATGTTCCTGAAACACCAATTGTCCATGAGAAACTTTGGGTAGATAAATATACCCCGAAATCATTTACTGAGCTTCTTAGTGATGAACATACAAATCGTGAGGTTCTCCTCTGGTTGAAGCAATGGGACTCTAGTGTATTTGGATCAGAGATTCGCAGCACATCGGATGAGGTTTTGTCTGCTTTGAAACGACATTCTACTAGTGCTCAAAATCAGAAACCTTTAGATTCAAAATTTCAAAGGATGAGTGGAGTTACCAAATGGAGTACCAGTAGATATAGACATTCTAGAAGTATGGACGAAAGTGGTAATTCAAAGAGCATTCAGGATATGTTGAATAGGAAAGCAAGGCATACTGGACCACCAGAACAGAAGATACTTTTGCTTTGTGGTCCACCGGGCCTTGGAAAAACTACACTTGCTCATGTAGCTGCTAGACATTGTGGATATCACGTGGTGGAGGTTAATGCCAGTGATGATCGCAGTACATCAACAATTGAAGCTAAAATCCTTGACGTGGTTCAGATGAACTCTGTCATGTCTGATTCAAGACCGAAATGCCTGGTGTTGGATGAAATTGATGGAGCACTTACTGATGGCAAGGGTGCTGTGGAGGTTCTTTTAAAGATGGTTTCTGCCGACAAGAAGTCTGATGTGGGAAAGGAAAATTTGGCAAAAGAGCAATCAGGAAGGAGATCCTCAAAGAAGGGACATAAAAAAGCATCACTGTCAAGACCTGTAATTTGCATTTGCAATGACCTATATGCTCCTGCCTTGAGACCTCTACGTCAAGTAGCAAAGGTTCACATATTTGTTCAACCAACAGTTAGTCGAGTGGTAAGCAGGCTCAAATATATATGTAACAAGGAAGGAATGAAAGCTAACGCCATTGCACTTACTGCTCTAGCAGAATATACAGAATGTGATATACGCTCATGCTTAAATACTCTCCAATTTCTCAGCAAGAAGAACGAAACCCTCAATGTGTTTGATATTGGTTCTCAAGTAGTTGGCCGGAAAGACATGTCGAAGAATGTTCTGGACATCTGGAAAGAGATTTTTCAAAGCAAAAGAACAAAGATGGAAAGAAAATCTCAGAATAGCATGCCCTTTGAATTTGACTCCTTGTACTCACTTATATCAAACCGTGGTGATCGTGACTTGATTCTTGACGGAATTCATGAAAACATTTTGCAGCTCAATTATCATGACCCAGTGATGCAGAAAACTGTCAAGTGCTTGAATAGTCTGGGAGTTTCTGATCTACTGCATCTATATATTATGCGTACACAACAAATGCCCCTTCAGGTTTATTTGCCCCCTGTAGCAATTACTGTACATCGCCAGGTAGCTCAAGTTCAGAAGCCTAACATTGAATGGCCAAGGTCATACCAGAGGTATCGAACAATGATGACAGAAAAGATGGACATTTTGAATACTTGGCACTACAAAATTCCACCATATATTGCAAGGAATTTATCAGCTAGTTCCTTTGTTGAAGACTTGATTTCTCCATTATTGCATATTCTGTCCCCTCCAACCATAAAACCGGTGGCATTACAATTACTATCTGATAAAGAGAAAAATGATCTTGCTCAATTAGTTAGCACGATGGTATCTTACTCTATAACATATAAGAACATAAAATCTGACATGCTCCCTAATAGCCTGAGACATGAAGTAGCAGATGATTTGACATTATCATTTGATCCCCCAATCAGCGACTTCATCAAATTTAAGGATTACACCTCAAATCATAATGTGCTTTCTTTAGCCATGAAGCAGATTCTTGTGCATGAGGTTGAAAAGCAAAAGATCTTGCAAGTAAATATTGATAGACCTTTAGGAAATGAATGCAGCATTATAAGGCCCGAAATTATTGAGGCTGGAACTAGCGGTGCCCATTCATCCAAAATCAATCACGCAGATGCAATTTCTGCAAAAAAAATTCAAAAGGAAAGTAATGTCTCGGAAGCAAAGCAAAATAGTGCAAAAGCCACCATGGTTTCACCTAAATTACATCCTGATAAAGGAGTGGCAGACAATGTGAAACTGTTGAACACAGGAACTACGAAGAAGTCATCCAGTGGTTCCTTTTTTGACAGGTTTAGGAAGTTGAATAACAAAGGTTTTCAAAGGGATGATGGAACTGAACAGAAAGAAGCAACCTTGGAGAATGATCCACGCCCATTACTGTTTAAATTTAATGAGGGTTTTACAAACGCAGTCAAGAGGCCTGTTCGTATTCGTGAATTTCTACTGTGA 2886 0.4165 MDMDMDMDVPLPEELELLESNTRLLEDYPDLGPPEPYPDEDQETPSTARPPSSPDLEYESEVQVIGHKRSRSDSPNGSFSEAVEPSEEKRSRNDESARATDEDWLRYSPPQGSDSVVAERVSFLNEKTLSRYASEIDGECVPVTAPNGDRVYAKLDRLGGEERLKKLDVRANSDGLLLEPINILFEKLEQEAFTKTLKASSECQSVPDVPETPIVHEKLWVDKYTPKSFTELLSDEHTNREVLLWLKQWDSSVFGSEIRSTSDEVLSALKRHSTSAQNQKPLDSKFQRMSGVTKWSTSRYRHSRSMDESGNSKSIQDMLNRKARHTGPPEQKILLLCGPPGLGKTTLAHVAARHCGYHVVEVNASDDRSTSTIEAKILDVVQMNSVMSDSRPKCLVLDEIDGALTDGKGAVEVLLKMVSADKKSDVGKENLAKEQSGRRSSKKGHKKASLSRPVICICNDLYAPALRPLRQVAKVHIFVQPTVSRVVSRLKYICNKEGMKANAIALTALAEYTECDIRSCLNTLQFLSKKNETLNVFDIGSQVVGRKDMSKNVLDIWKEIFQSKRTKMERKSQNSMPFEFDSLYSLISNRGDRDLILDGIHENILQLNYHDPVMQKTVKCLNSLGVSDLLHLYIMRTQQMPLQVYLPPVAITVHRQVAQVQKPNIEWPRSYQRYRTMMTEKMDILNTWHYKIPPYIARNLSASSFVEDLISPLLHILSPPTIKPVALQLLSDKEKNDLAQLVSTMVSYSITYKNIKSDMLPNSLRHEVADDLTLSFDPPISDFIKFKDYTSNHNVLSLAMKQILVHEVEKQKILQVNIDRPLGNECSIIRPEIIEAGTSGAHSSKINHADAISAKKIQKESNVSEAKQNSAKATMVSPKLHPDKGVADNVKLLNTGTTKKSSSGSFFDRFRKLNNKGFQRDDGTEQKEATLENDPRPLLFKFNEGFTNAVKRPVRIREFLL 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2140 961 Gene3D - 217 479 IPR027417 -
Dere03g2140 961 MobiDBLite consensus disorder prediction 1 113 - -
Dere03g2140 961 FunFam Chromosome transmission fidelity protein 18 481 548 - -
Dere03g2140 961 MobiDBLite consensus disorder prediction 861 880 - -
Dere03g2140 961 MobiDBLite consensus disorder prediction 861 875 - -
Dere03g2140 961 Gene3D - 481 551 - -
Dere03g2140 961 MobiDBLite consensus disorder prediction 426 446 - -
Dere03g2140 961 CDD AAA 329 419 - -
Dere03g2140 961 CDD HLD_clamp_RFC 481 539 - -
Dere03g2140 961 Pfam ATPase family associated with various cellular activities (AAA) 334 460 IPR003959 GO:0005524|GO:0016887
Dere03g2140 961 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 5 961 - -
Dere03g2140 961 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 536 IPR027417 -
Dere03g2140 961 MobiDBLite consensus disorder prediction 83 102 - -
Dere03g2140 961 SMART AAA_5 330 484 IPR003593 GO:0016887
Dere03g2140 961 MobiDBLite consensus disorder prediction 295 314 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2140 331 755 Core DNA Replication Machinery Family AT5G22010 24.670 2.86e-15 79.0